CV884999

Overview
NameCV884999
Unique NameCV884999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884999 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.664e-23
Identity = 89/219 (40.64%), Postives = 109/219 (49.77%), Query Frame = -3
Query:  247 KSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV-----NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 879
            K SVKAN QK V K   +P  P+L QN N         + N+  +EEK QV     NQ+G   S  D G  G++           YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  191 KRSVKANLQKPVAKPNPNP-SPALVQNSNIS-------FENMCFMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQ-----------YFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of CV884999 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.174e-23
Identity = 83/215 (38.60%), Postives = 114/215 (53.02%), Query Frame = -3
Query:  253 KSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV--NQYGYMGSFPDDGELGFKPFVPTADDTPVYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 879
            + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  196 RPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
BLAST of CV884999 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.458e-19
Identity = 75/213 (35.21%), Postives = 108/213 (50.70%), Query Frame = -3
Query:  268 PKSSVKANSQKSVPKACLSPVQ--PSLNQNFNYLNNSDQDYYNNVSILEEKPQVNQYGYMGSFPDDGELGFKPFVPTADDT-PV---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 882
            P ++ K  +  +  KA  S V+  P++   FN L N++   Y + +    KP V         PD+      PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  179 PTTAQKRRAGSTTAKAPKSSVEQKPTVKPAFNNLANANAFVYPSANFTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
The following BLAST results are available for this feature:
BLAST of CV884999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RA212_ARATH1.664e-2340.64Ethylene-responsive transcription factor RAP2-12 O... [more]
RAP22_ARATH2.174e-2338.60Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF1_ORYSJ1.458e-1935.21Ethylene-responsive transcription factor 1 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884999 ID=CV884999; Name=CV884999; organism=Citrus sinensis; type=EST; length=884bp
ATAATCTCCATACAGTCACTAGATTGCAAAATGTTCAAAATGTTTCAAGT
CTCATAGGTTAAAAGGAACCTAAACACCTATATACTAAGAATCTACTGAA
AGCTCCTGAGAGCAATCTCCACACATGGCTTGGCTTAAGCATGTCCAACA
ATTAAGCACTGCATCTCCAACACAGATAGACAACCAGTCCTCAAAGTAAC
ATATAGCCTTATTTACAAAACTAGCAAGCACATGAAAGTTTGCTCAATAC
ACTCCCCCTAGGGTAGAAGGGAAGTCATCAAAGCTCCAAAGGTTCATCAA
GTTTCCACCATCCTGGGTGTTGTCACCATTGAGGAAGGCATCGAGGGAGG
CCTCCCAGCTTCCTTCAGGATACGGCATTGGCAAGAACTTCACCTGATTG
TCAAAAGCCAAAAGCTCATCAGACAGAGACTTTCCATTGTTATCCTGAAC
AGGCACAGCATTCTCAGAGTTAGATTTCAGCTTCTTCATCGGGTTTGCAA
CCGCATCCACAAACTGAGATTCATCAACTTCAGGGGTAGCTTCCAAAACA
GATGAGATTTCAGGAGTCTTTGGTGCCTGTTCTCCCCAGCCAAAGTCAGA
ACAATCAAAGGAGTTACTGCCTTGGTCAGAGTTGAAGTACACAGGAGTAT
CATCAGCTGTTGGCACAAAGGGTTTGAATCCTAGTTCTCCATCATCAGGG
AAGGAGCCCATATATCCATACTGATTCACTTGTGGTTTCTCCTCCAGAAT
ACTCACATTGTTGTAGTAATCCTGATCGGAGTTGTTCAAGTAATTGAAGT
TTTGGTTCAAACTTGGCTGCACGGGGCTTAGGCAAGCTTTGGGAACGGAT
TTCTGAGAGTTTGCCTTCACTGAGCTCTTTGGAG
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