CV884998

Overview
NameCV884998
Unique NameCV884998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.368e-46
Identity = 118/280 (42.14%), Postives = 153/280 (54.64%), Query Frame = 3
Query:  126 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELK-------RSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK----------------SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDE---TPAAAPKSSVKANS-QKSV--PKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV--NQYGYMGSFPDDGELGFKPF 872
            MCGGAIIS +IPP    R  ++T E++WP+LK       + SNK+     +DDDFEADFQGFK                       KPF F+A  K                ++    V+  EQA+KS++RKRKNQYRGIRQRPWGKWAAEIRDP KG R WLGTF+T              IRG KAKVNFP+E   +  +  + S K N+ QKSV  P   ++ VQ   + +  Y NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++ F
Sbjct:    1 MCGGAIISDFIPPP---RSLRVTNEFIWPDLKNKVKASKKRSNKRSDFFDLDDDFEADFQGFKDDSAFDCEDDDDVFVNV------KPFVFTATTKPVASAFVSTGIYLVGSAYAKKTVESAEQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVSQKRPSAKTNNLQKSVAKPNKSVTLVQQPTHLSQQYCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQYF 271          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.553e-42
Identity = 119/272 (43.75%), Postives = 147/272 (54.04%), Query Frame = 3
Query:  126 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRS--SNKKYSKPI-----VDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRK------SHGSTAVKHVE----QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDET-PAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV-----NQYGYMGSFPDDGELGFKPF 872
            MCGGAIIS +IPP    R +++T+E++WP+LK++   +KK SK        D +FEADFQGFK                       KPF F++  K      + GS   K V      A+KS  RKRKNQYRGIRQRPWGKWAAEIRDP +G R+WLGTF T              IRG KAKVNFP+E   A + K SVKAN QK V K   +P  P+L QN N         + N+  +EEK QV     NQ+G   S  D G  G++ F
Sbjct:    1 MCGGAIISDFIPPP---RSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADV---KPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANSQKRSVKANLQKPVAKPNPNP-SPALVQNSNI-------SFENMCFMEEKHQVSNNNNNQFGMTNSV-DAGCNGYQYF 257          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.168e-31
Identity = 91/240 (37.92%), Postives = 120/240 (50.00%), Query Frame = 3
Query:  126 MCGGAIISGYIPPTVPGRP---KKLTAEYLWPELKR----SSNKKYSKPIV---DDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVE-QAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEKPQV 812
            MCGGAII       + G P   ++ T   LWPE K+       +++    V   D+DFEADF+ F+                         F  +  R +  +      +  A KS +RKRKNQ+RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+              IRGKKAKVNFP E P  A K    + + K+ PK+ +   +P++   FN L N++   Y + +    KP V
Sbjct:    1 MCGGAIIHH-----LKGHPEGSRRATEGLLWPEKKKPRWGGGGRRHFGGFVEEDDEDFEADFEEFEVDSGDSDLELGEEDDDDVVEIKPAAFKRALSRDNLSTITTAGFDGPAAKSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP-EAPTTAQKRRAGSTTAKA-PKSSVEQ-KPTVKPAFNNLANANAFVYPSANFTSNKPFV 232          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 8.336e-28
Identity = 89/247 (36.03%), Postives = 105/247 (42.51%), Query Frame = 3
Query:  126 MCGGAIISGYIPPTVPGRPKKLTAEYLWPELKRSSNKKYSKPIVDDDFEADFQGFKXXXXXXXXXXXXXXXXXXXXXXXKPFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD---------ETPAAAPKS--------------SVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILE 797
            MCGGAIIS Y P     + +KLTAE LW EL  S+          DDF   +   K                               + +    AVK  +  +    RKRKN YRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT              IRG KAK+NFPD           P ++P+S              S    SQ S P  C+        QN +Y    D D    +S LE
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAA---------DDFWGFYSTSKLHP--------------------------TNQVNVKEEAVKKEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLE 212          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.073e-19
Identity = 43/69 (62.32%), Postives = 51/69 (73.91%), Query Frame = 3
Query:  432 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 638
            ++  +R+RKN YRGIRQRPWGKWAAEIRDP+KGVRVWLGTF T              IRG+KAK+NFP+
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPN 107          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.821e-18
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  444 ERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPA-----AAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEE 800
            ++K+ ++Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT              IRG KAK+NFP+E+       A     V+ N +  +  A +S    S   +F +  N+      +   LE+
Sbjct:   18 KKKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEADLDVAVVSSAPSSSCLDFLWEENNPDTLLIDTQWLED 141          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.881e-17
Identity = 49/126 (38.89%), Postives = 61/126 (48.41%), Query Frame = 3
Query:  453 RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSVKANSQKSVPKACLSPVQPSLNQNFNYLNNSDQDYYNNVSILEEK-PQVNQYGY 827
            RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T               +G KAK+NFP+    A+  S+                         NY ++++Q YY+N     +  P  NQY Y
Sbjct:   88 RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASNTSTTTGPP--------------------NYYSSNNQIYYSNPQTNPQTIPYFNQYYY 193          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.069e-17
Identity = 50/116 (43.10%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  372 TFSAGRKSHGSTAVKHVEQAKKSTERK-RKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP-------DETPAAAPKSSVKANSQKSV 695
            T S+ R+   S   K  E   K  +RK +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AK+NFP         +P AA     KA++  SV
Sbjct:  104 TSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAADDIGAKASASASV 219          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.475e-16
Identity = 48/124 (38.71%), Postives = 64/124 (51.61%), Query Frame = 3
Query:  402 STAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAPKSSV-----------KANSQKSVPKACLSPVQPSLNQN 740
            +TA    E +  S ++ R+ +YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAK+NFP+      P S+               S+ S     L P++P+ NQ+
Sbjct:  165 TTATASSETSSFSGDQPRR-RYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENVKLVRPASTEAQPVHQTAAQRPTQSRNSGSTTTLLPIRPASNQS 287          
BLAST of CV884998 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.926e-16
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = 3
Query:  366 PFTFSAGRKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPDETPAAAP 659
            P +F+    SH     + + +A     R++K +YRG+RQRPWGKWAAEIRDP +  RVWLGTF+T               RG KAK+NFP++     P
Sbjct:   45 PSSFARVDSSHNPIE-ESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDVRILPP 141          
The following BLAST results are available for this feature:
BLAST of CV884998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RAP22_ARATH1.368e-4642.14Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH4.553e-4243.75Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ6.168e-3137.92Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP23_ARATH8.336e-2836.03Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH7.073e-1962.32Ethylene-responsive transcription factor ERF071 OS... [more]
ERF73_ARATH7.821e-1839.52Ethylene-responsive transcription factor ERF073 OS... [more]
EF115_ARATH3.881e-1738.89Ethylene-responsive transcription factor ERF115 OS... [more]
EF109_ARATH5.069e-1743.10Ethylene-responsive transcription factor ERF109 OS... [more]
ABR1_ARATH1.475e-1638.71Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF110_ARATH1.926e-1642.86Ethylene-responsive transcription factor ERF110 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884998 ID=CV884998; Name=CV884998; organism=Citrus sinensis; type=EST; length=874bp
AGACACTGAAGAATCCAAAACTCTCTCAAGCCAACAAAAGCAAATTTTAC
ATTTAACCCATTCTCTCCTAAAAATCTTTTCTCTTTAGTGCCTGAACAAA
CCAGAAGAAACGAGAAACCTTAACCATGTGTGGAGGTGCTATCATTTCGG
GCTACATCCCGCCCACCGTGCCGGGCCGGCCAAAGAAGCTGACGGCGGAG
TATCTCTGGCCGGAGCTGAAGAGGTCATCCAACAAGAAGTACTCAAAGCC
GATCGTCGACGATGACTTCGAGGCTGATTTCCAAGGATTCAAGGACGATG
AAGAAGAGTCTGACATTGATGGTGACGTGGACGTTGATGCCGACTTGATG
ATGGCTGATATTAAGCCTTTCACTTTCTCAGCTGGTCGCAAGTCTCATGG
ATCTACAGCCGTGAAGCACGTTGAACAAGCTAAAAAATCCACAGAAAGAA
AGAGGAAGAATCAATATAGGGGAATTAGGCAGCGTCCATGGGGAAAATGG
GCTGCTGAGATCCGTGACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAAC
TTTCAATACCGCTGAAGAAGCCGCTAGGGCTTATGATGCCGAGGCACGGA
GGATCCGTGGGAAGAAAGCTAAGGTTAACTTTCCAGATGAAACTCCTGCT
GCTGCTCCAAAGAGCTCAGTGAAGGCAAACTCTCAGAAATCCGTTCCCAA
AGCTTGCCTAAGCCCCGTGCAGCCAAGTTTGAACCAAAACTTCAATTACT
TGAACAACTCCGATCAGGATTACTACAACAATGTGAGTATTCTGGAGGAG
AAACCACAAGTGAATCAGTATGGATATATGGGCTCCTTCCCTGATGATGG
AGAACTAGGATTCAAACCCTTTGT
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