CV884996

Overview
NameCV884996
Unique NameCV884996
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.248e-32
Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 3
Query:  102 RGTKQSKI*SSVLLLETEMAGASARLDLDGR-PIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            RG     +  + L  E  +   S  LD + R P +   + ++G  GFIG+HL E++L +  + I  +D+ +D I+ L  +P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD ++    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  283 RGDNGLYLSGAQLAREFGLVEGSQLLDTEKRRPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDASF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 501          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.952e-32
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 505          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.952e-32
Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3
Query:  213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L      G  R  F   +I  H+  +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C   NKR++  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D
Sbjct:  325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 506          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.605e-31
Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 3
Query:  192 RPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            R ++   + ++G  GFIG+HL E++L +  ++I  +D+ +D I+ L  +P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  315 RSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDANF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 502          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.443e-31
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 3
Query:  213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            + ++G  GFIG+HL E++L E  +++  LD+ +D I   L  P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +++YC + +KR+I  ST EVYG     F                 ED S  I G I K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D
Sbjct:  318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLTHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKFFD---------------EDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.803e-31
Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = 3
Query:  189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            GR  +   + ++G  GFIG+HL E++L +  + +  LD+ +D I+ L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKNF---DEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31
Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 3
Query:  213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            + ++G  GFIG+HL E++L +  + I  LD+ +D I   L      G  R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +V+ C + NKR+I  ST EVYG            +  D  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D
Sbjct:  318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD 499          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31
Identity = 79/211 (37.44%), Postives = 118/211 (55.92%), Query Frame = 3
Query:  189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I+ L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDQYF---DEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31
Identity = 75/203 (36.95%), Postives = 112/203 (55.17%), Query Frame = 3
Query:  213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            + ++G  GFIG+HL E++L +  ++I  LD+ +D I   L+        R  F   +I  H   +E  IK  D+ + L AI TP +Y   PL     +F + L +++ C + NKR+I  ST EVYG                       ED+S  + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D
Sbjct:  318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFD---------------EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD 499          
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.293e-30
Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = 3
Query:  189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818
            GR  +   + ++G  GFIG+HL E++L +  +++  LD+ +D I  L   P      G I  H   I++       IK  D+ + L AI TP +Y   PL     +F + L +V+YC + NKR+I  ST EVYG            + QD  +    ED S  I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D
Sbjct:  313 GRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKHF---DEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501          
The following BLAST results are available for this feature:
BLAST of CV884996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
ARNA_PSE145.248e-3236.10Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PECCP8.952e-3238.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ERWCT8.952e-3238.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEU22.605e-3137.62Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_ESCF34.443e-3136.95Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEF55.803e-3138.39Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_SERP57.578e-3138.92Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEFS7.578e-3137.44Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_KLEP77.578e-3136.95Bifunctional polymyxin resistance protein arnA OS=... [more]
ARNA_PSEPF1.293e-3038.39Bifunctional polymyxin resistance protein arnA OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011H05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884996 ID=CV884996; Name=CV884996; organism=Citrus sinensis; type=EST; length=836bp
TCTGTCTCTGTTCTCTCTGTCTGTCTCTCTCTCTCTCTCTACCCTACATA
CCCGGTGCACGCTAGCATCCACCTCGCCAAATACAACGCATTTTCAATTC
GCGTGGAACGAAACAAAGCAAAATCTAAAGTTCAGTTTTACTTCTGGAAA
CGGAAATGGCAGGCGCAAGCGCGAGATTGGATCTGGATGGGAGGCCGATA
AAGCCGATGACGATATGTATGATCGGCGCCGGCGGCTTCATCGGCTCTCA
TCTCTGCGAAAAGATTCTCCTTGAGACCCCTCACAAAATTCTAGCACTCG
ACGTCTACAATGACAAGATCAAGCACTTGCTCGAACCGGAGTCACAGACT
GGGGCCGGCCGGATCCAGTTCCACCGACTCAACATCAAGCACGATTCTCG
CCTCGAAGGCCTCATCAAGATGGCAGATCTGACGATAAATCTGGCGGCGA
TCTGTACGCCGGCGGATTACAACACGCGGCCGTTGGACACGATCTACAGC
AACTTTATTGACGCGCTTCCGGTGGTCAAGTACTGTTCGGAGAACAACAA
GCGTTTGATTCACTTCTCTACTTGTGAAGTATATGGAAAGACCATTGGAA
GCTTTCTTCCTAAAGATAGTCCTCTTCGGCAGGATCCTGCTTACTATGTT
CTTAAAGAAGATGCCTCCCCCTGCATTTTTGGCTCTATTGAGAAGCAGAG
GTGGTCGTATGCATGTGCAAAGCAATTGATTGAAAGGCTGATTTATGCTG
AGGGTGCAGAGAATGGTCTTGAGTTCACCATTGTGAGGCCCTTTAACTGG
ATTGGTCCGAGGATGGACTTCATTCCCGGCATTGAT
back to top