CV884996
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSE14 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=arnA PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 5.248e-32 Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 3 Query: 102 RGTKQSKI*SSVLLLETEMAGASARLDLDGR-PIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 RG + + L E + S LD + R P + + ++G GFIG+HL E++L + + I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD ++ ED S I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D Sbjct: 283 RGDNGLYLSGAQLAREFGLVEGSQLLDTEKRRPARRTRVLILGVNGFIGNHLSERLLQDDRYDIYGMDIGSDAIERLRTKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDASF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 501
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PECCP (Bifunctional polymyxin resistance protein arnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.952e-32 Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3 Query: 213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 + ++G GFIG+HL E++L + ++I LD+ +D I L G R F +I H+ +E IK D+ + L AI TP +Y PL +F + L +V+ C NKR++ ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D Sbjct: 324 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 505
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_ERWCT (Bifunctional polymyxin resistance protein arnA OS=Erwinia carotovora subsp. atroseptica GN=arnA PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 8.952e-32 Identity = 79/203 (38.92%), Postives = 114/203 (56.16%), Query Frame = 3 Query: 213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 + ++G GFIG+HL E++L + ++I LD+ +D I L G R F +I H+ +E IK D+ + L AI TP +Y PL +F + L +V+ C NKR++ ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+NGL FT+ RPFNW+GPR+D Sbjct: 325 VLILGVNGFIGNHLTERLLRDDRYEIYGLDISSDAIARFL------GDPRFHFVEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYNKRIVFPSTSEVYG------------MCDDKEF---DEDTSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKNGLRFTLFRPFNWMGPRLD 506
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEU2 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas syringae pv. syringae (strain B728a) GN=arnA PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.605e-31 Identity = 79/210 (37.62%), Postives = 119/210 (56.67%), Query Frame = 3 Query: 192 RPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHL-LEPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 R ++ + ++G GFIG+HL E++L + ++I +D+ +D I+ L +P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D Sbjct: 315 RSVRRTRVLILGVNGFIGNHLSERLLQDDRYEIYGMDIGSDAIERLRAKPNFHFIEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIVRYCVKYNKRVIFPSTSEVYG------------MCQDANF---NEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYG-QKGLQFTLFRPFNWMGPRLD 502
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_ESCF3 (Bifunctional polymyxin resistance protein arnA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=arnA PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 4.443e-31 Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 3 Query: 213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLL-EPESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 + ++G GFIG+HL E++L E +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +++YC + +KR+I ST EVYG F ED S I G I K RW Y+ +KQL++R+I+A G + GL+FT+ RPFNW+GPR+D Sbjct: 318 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLTHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVQYHKRIIFPSTSEVYGMCTDKFFD---------------EDHSNLIVGPINKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLD 499
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEF5 (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=arnA PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 5.803e-31 Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = 3 Query: 189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 GR + + ++G GFIG+HL E++L + + + LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDKYDVYGLDIGSDAIERLRSHPNFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKNF---DEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_SERP5 (Bifunctional polymyxin resistance protein arnA OS=Serratia proteamaculans (strain 568) GN=arnA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31 Identity = 79/203 (38.92%), Postives = 113/203 (55.67%), Query Frame = 3 Query: 213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 + ++G GFIG+HL E++L + + I LD+ +D I L G R F +I H +E IK D+ + L AI TP +Y PL +F + L +V+ C + NKR+I ST EVYG + D + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL+FT+ RPFNW+GPR+D Sbjct: 318 VLILGVNGFIGNHLTERLLRDDRYDIYGLDIGSDAISRFL------GNPRFHFVEGDISIHSEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVKYNKRIIFPSTSEVYG------------MCDDKEF---DEDHSRLIVGPINKQRWIYSVSKQLLDRVIWAYGAKEGLKFTLFRPFNWMGPRLD 499
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEFS (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain SBW25) GN=arnA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31 Identity = 79/211 (37.44%), Postives = 118/211 (55.92%), Query Frame = 3 Query: 189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 GR + + ++G GFIG+HL E++L + +++ LD+ +D I+ L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S + G + KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D Sbjct: 313 GRKPRRTRVLILGVNGFIGNHLSERLLRDDRYEVYGLDIGSDAIERLRSHPNFHYVEGDISIHTEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDQYF---DEDTSNLVVGPVNKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_KLEP7 (Bifunctional polymyxin resistance protein arnA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnA PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 7.578e-31 Identity = 75/203 (36.95%), Postives = 112/203 (55.17%), Query Frame = 3 Query: 213 ICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLEPESQTGAGRIQFHRLNIK-HDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 + ++G GFIG+HL E++L + ++I LD+ +D I L+ R F +I H +E IK D+ + L AI TP +Y PL +F + L +++ C + NKR+I ST EVYG ED+S + G I KQRW Y+ +KQL++R+I+A G +NGL+FT+ RPFNW+GPR+D Sbjct: 318 VLILGVNGFIGNHLTERLLQDDNYEIYGLDIGSDAISRFLD------CPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRDCVKYNKRIIFPSTSEVYGMCTDKNFD---------------EDSSNLVVGPINKQRWIYSVSKQLLDRVIWAYGDKNGLKFTLFRPFNWMGPRLD 499
BLAST of CV884996 vs. ExPASy Swiss-Prot
Match: ARNA_PSEPF (Bifunctional polymyxin resistance protein arnA OS=Pseudomonas fluorescens (strain Pf0-1) GN=arnA PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.293e-30 Identity = 81/211 (38.39%), Postives = 117/211 (55.45%), Query Frame = 3 Query: 189 GRPIKPMTICMIGAGGFIGSHLCEKILLETPHKILALDVYNDKIKHLLE-PESQTGAGRIQFHRLNIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKDSPLRQDPAYYVLKEDASPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMD 818 GR + + ++G GFIG+HL E++L + +++ LD+ +D I L P G I H I++ IK D+ + L AI TP +Y PL +F + L +V+YC + NKR+I ST EVYG + QD + ED S I G I KQRW Y+ +KQL++R+I+A GA+ GL FT+ RPFNW+GPR+D Sbjct: 313 GRGPRRTRVLILGVNGFIGNHLSERLLRDERYEVYGLDIGSDAIDRLRSHPRFHFVEGDISIHSEWIEYH------IKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKLVRYCVKYNKRVIFPSTSEVYG------------MCQDKHF---DEDRSNLIVGPINKQRWIYSVSKQLLDRVIWAYGAK-GLNFTLFRPFNWMGPRLD 501 The following BLAST results are available for this feature:
BLAST of CV884996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884996 ID=CV884996; Name=CV884996; organism=Citrus sinensis; type=EST; length=836bpback to top |