CV884975

Overview
NameCV884975
Unique NameCV884975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV884975 vs. ExPASy Swiss-Prot
Match: RED_RAT (Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -2 
Query:   42 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 362
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CV884975 vs. ExPASy Swiss-Prot
Match: RED_PONAB (Protein Red OS=Pongo abelii GN=IK PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -2 
Query:   42 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 362
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CV884975 vs. ExPASy Swiss-Prot
Match: RED_HUMAN (Protein Red OS=Homo sapiens GN=IK PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.786e-16
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -2 
Query:   42 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 362
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RKKME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKKMEAD 548
[Close]
BLAST of CV884975 vs. ExPASy Swiss-Prot
Match: RED_MOUSE (Protein Red OS=Mus musculus GN=Ik PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.979e-16
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = -2 
Query:   42 ISESYSECYPGYQEYNREIVXXXXXXXXXXXXMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRK---QNKDQKLTNELHKINKIL-ARKKMEKD 362
            +S SY+ECYP   +   ++               G  KG L RWDF+T+EE++ Y   KEA+PKAAFQ+G+KM +GRKTR+    N   +L  +  KI+ I+  RK+ME D
Sbjct:  441 MSNSYAECYPATMD---DMAVDSDEEVDYSKMDQGNKKGPLGRWDFDTQEEYSEYMNNKEALPKAAFQYGIKMSEGRKTRRFKETNDKAELDRQWKKISAIIEKRKRMEAD 548
The following BLAST results are available for this feature:
BLAST of CV884975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RED_RAT1.786e-1642.34Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1[more]
RED_PONAB1.786e-1642.34Protein Red OS=Pongo abelii GN=IK PE=2 SV=1[more]
RED_HUMAN1.786e-1642.34Protein Red OS=Homo sapiens GN=IK PE=1 SV=2[more]
RED_MOUSE3.979e-1641.44Protein Red OS=Mus musculus GN=Ik PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884975 ID=CV884975; Name=CV884975; organism=Citrus sinensis; type=EST; length=618bp
GGTTGTACATCATCATCATAATGGCCACCTTCACCGTTAGTATCCTTCTC
CATTTTCTTTCTTGCTAGAATTTTATTAATCTTGTGAAGCTCATTGGTTA
GCTTCTGATCTTTGTTCTGTTTCCGTGTCTTCCGACCATCTTGCATCTTC
ACACCAAATTGAAAGGCAGCTTTCGGCATAGCTTCCTTCTGCTCATTGTA
TGTTGCCCATTCCTCTTCTGTTTCAAAGTCCCACCGATGAAGACGACCCT
TTGCCCTTCCACCCATATCCATTTTAGACAAGTCATCTTCATCATCACTG
TCCACAATTTCACGGTTATACTCTTGATAACCCGGGTAACATTCAGAATA
ACTCTCAGAGATGAAGTTAGGATCCTTTTCTCGGGCATCTTTCTCTCTCA
ATTGTTGAAGCCTCTGATCATCCCGCTTGAAGACAGATCCCAGGCCCCGG
TCCTTCTCTTCTTGAGTCATGAAGCGTGGATCTTGTGGCATATTTAAACC
TGCTTGCATCTCATAAGTCTGCATATCCGGCTGGAGGTATTGTTCGGGAT
AAGCCAATTGCTCAGCATATTGATAGTCCTGCCACTCTCCCTGGTAGCCA
CCAGCCAAAGCTTGTCCT
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