EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 1.165e-79
Identity = 154/207 (74.40%), Postives = 170/207 (82.13%), Query Frame = 2
Query:   53 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK---NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DKP + L+NG SLYYMSSLPNEAVY+KEK+GV WPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LC KRALE FRLDP KWGVNVQ LSGSP+NF V   + K    +M     L  P GG LS   QT+TKK  A +IFF+TM Y+++ ++ GYI  DQL
Sbjct:   15 DKPVKSLYNGGSLYYMSSLPNEAVYDKEKSGVAWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFQVYTALLKPHERIM----ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLD-ESTGYIDYDQL 216          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.021e-75
Identity = 151/207 (72.95%), Postives = 166/207 (80.19%), Query Frame = 2
Query:   53 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK---NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DKP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEVVDPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LC KRALE FRLDP KWGVNVQ LSGSP+NF V   + K    +M     L  P GG LS   QT+TKK  A +IFF+TM Y++  ++ GYI  DQL
Sbjct:   15 DKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVVDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKAHDRIM----ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQL 216          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 8.643e-75
Identity = 148/207 (71.50%), Postives = 167/207 (80.68%), Query Frame = 2
Query:   53 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK---NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            +K +RPLF+ SSLYY SSLP+EAVY+KE   VTWPKQLN+PLEV+DPEIADIIE EKARQWKGLELIPSENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LC KRALE FRLDP KWGVNVQ LSGSPSNF V   + K    +M     L  P GG LS   QT+TKK  A +IFF+TM Y+++ ++ GYI  DQL
Sbjct:   15 NKSSRPLFSASSLYYKSSLPDEAVYDKENPRVTWPKQLNSPLEVIDPEIADIIELEKARQWKGLELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFQVYTALLKPHDRIM----ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLD-ESTGYIDYDQL 216          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 2.780e-73
Identity = 148/207 (71.50%), Postives = 165/207 (79.71%), Query Frame = 2
Query:   53 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK---NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DKP RPL   +S Y MSSLP+EAV EKE++ VTWPKQLNAPLE VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LC KRALE FRLDP KWGVNVQ LSGSP+NF V   + K    +M     L  P GG LS   QT+TKK  A +IFF+TM Y+++ ++ GYI  DQ+
Sbjct:   15 DKPIRPLIRSTSCY-MSSLPSEAVDEKERSRVTWPKQLNAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIM----ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLD-ESTGYIDYDQM 215          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 3.074e-72
Identity = 147/207 (71.01%), Postives = 163/207 (78.74%), Query Frame = 2
Query:   53 DKPTRPLFNGSSLYYMSSLPNEAVYEKEKNGVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK---NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            +KP + LFNG  LY MSSLP+EAVYEKE+ GVTWPKQLNAPLEV DPEIADIIE EKARQWKGLELI SENFTS+SVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAE+LC KRALE FRLD  KWGVNVQ LSGSP+NF V   + K    +M     L  P GG LS   QT+TKK  A +IFF+TM Y++  ++ GYI  DQL
Sbjct:   15 NKPLQRLFNGGHLYSMSSLPSEAVYEKERPGVTWPKQLNAPLEVGDPEIADIIELEKARQWKGLELILSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDAAKWGVNVQPLSGSPANFHVYTALLKAHDRIM----ALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLN-ESTGYIDYDQL 216          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_CAEEL (Serine hydroxymethyltransferase OS=Caenorhabditis elegans GN=mel-32 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 2.149e-41
Identity = 95/164 (57.93%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI-GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            +E VDPE+ DI+++EK RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LC KRALE F LDP KWGVNVQ LSGSP+NF+V   I G N  I    L  P GG L+    T  +K  A + FF+++ YK++  T G I  D+L
Sbjct:   52 VEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRI--MGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVD-PTTGLIDYDKL 212          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 4.787e-41
Identity = 93/164 (56.71%), Postives = 118/164 (71.95%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HC-IGKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            +E +DPE+ +I+++EK+RQ +GLELI SENFTS +VM A+GS M NKYSEGYPGARYYGGNE+ID  E LC KRALE F LDP KWGVNVQSLSGSP+NF+V    +G N  I    L  P GG L+    T  +K  A + FF++M YK++ ++ G I  D+L
Sbjct:   56 VEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRI--MGLDLPDGGHLTHGFFTPARKVSATSEFFQSMPYKVDAQS-GLIDYDKL 216          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.626e-39
Identity = 86/155 (55.48%), Postives = 112/155 (72.26%), Query Frame = 2
Query:  167 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKI 625
            N PL+ VD EI +++  EK RQ+KGLELI SENFTS +VM+A+GS  TNKY+EGYPG+RYYGG E +D  E+LC KRAL+ FRLD  KWGVNVQ  SGSP+NF+V   + +  + ++G   L  P GG L+   QT+ KK  A +IFF++M Y+I
Sbjct:    7 NTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRYYGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMG---LDLPSGGHLTHGYQTDKKKISASSIFFESMPYQI 158          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.851e-39
Identity = 89/166 (53.61%), Postives = 112/166 (67.47%), Query Frame = 2
Query:  173 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            PL+  DP +A+I+ HE  RQ   + LI SENFTS +VM A+GSVM+NKYSEGYPGARYYGGN++ID  E+LC +RAL  F LDP KWGVNVQ LSGSP+N  V   I      ++G   L  P GG LS   QT+TKK  A + +F++M Y+++  T G I  D L
Sbjct:   11 PLKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMG---LDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNT-GLIDYDML 172          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.103e-37
Identity = 86/159 (54.09%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  164 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN---FSV*HCIGKNLMIGSWPLIFPMGGILSPAIQ-TNTKKKPAGAIFFKTMAYKIE 628
            L+  ++  DPE+ DI+  E++RQ + + LIPSENFTSV+VM  +GS M NKYSEGYPG RYYGGN+YIDMAESLC KRALE + LDP KWGVNVQSLSG+P+N   +S    +G  +M     L  P GG LS   Q  N  K    + +F+TMAY+++
Sbjct:   36 LSQHVQEFDPEMYDILTKERSRQKRSITLIPSENFTSVAVMNLLGSEMQNKYSEGYPGQRYYGGNQYIDMAESLCQKRALELYGLDPAKWGVNVQSLSGAPANLYAYSAIMEVGDRMM----GLDLPHGGHLSHGYQLQNGNKISYISKYFQTMAYRVD 190          
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_SOLTU1.165e-7974.40Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.021e-7572.95Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_PEA8.643e-7571.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH2.780e-7371.50Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYN_FLAPR3.074e-7271.01Serine hydroxymethyltransferase 2, mitochondrial O... [more]
GLYC_CAEEL2.149e-4157.93Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC_CAEBR4.787e-4156.71Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]
GLYC1_DICDI2.626e-3955.48Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYD_SCHPO5.851e-3953.61Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_ASHGO1.103e-3754.09Serine hydroxymethyltransferase, mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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