CV884960

Overview
NameCV884960
Unique NameCV884960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1867 contig Csv1_Contig1867:19..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 303.138 bits (775), Expect = 1.194e-81
Identity = 144/248 (58.06%), Postives = 175/248 (70.56%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   C     C  + +G G D G L  +I+RE F+ +L +RND  C ARGFYTYDAFI AAK+FPAF  +G++  RKRE+AAF AQT HETTGG  W  AP G Y WGYCY R+++              PG QY+GRGP+QLTWN NY +CG A+GVDLLNNPDLLATDP +SFKSA WFWMT Q PKPSCH+VII  W PS +D  A R+PG+GL TNIINGG+ECG+GWN+ V +RIGF+  +
Sbjct:   46 GNTDDYCKKENGCQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRY 292          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 5.926e-81
Identity = 146/249 (58.63%), Postives = 180/249 (72.29%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PS+ D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRY 295          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 300.827 bits (769), Expect = 5.926e-81
Identity = 147/254 (57.87%), Postives = 180/254 (70.87%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTD-------GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   CG G  C  +  G  T        GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T RKREIAAFFAQT HETTGGW  AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSA+WFWMT Q PKPSCH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +
Sbjct:   48 GNTNDYCGPGN-CQSQCPGGPTPTPPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRY 300          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.011e-80
Identity = 142/246 (57.72%), Postives = 173/246 (70.33%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   CG G  C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +           PGQ YYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G +S V +RIGFF  +
Sbjct:   52 GSTTDYCGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRY 295          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 6.552e-80
Identity = 141/246 (57.32%), Postives = 172/246 (69.92%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   CG    C  +  G      +L  +ISR  F+ +L +RND  C A+GFYTYDAFI AAKA+P+FGN+G+   RKREIAAF  QT HETTGGW  AP G YAWGYC++R+ +  +           PGQ YYGRGPIQ++WN NY +CG A+GVDLLN PDL+ATD V+SFKSA+WFWMTAQ PKPS H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G +S V +RIGFF  +
Sbjct:   51 GSTTDYCGKD--CQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRY 294          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 6.552e-80
Identity = 138/246 (56.10%), Postives = 174/246 (70.73%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +++ CG G  C  + +G  + GG L  +IS + F ++L +RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYC++R+ +  +            G QYYGRGPIQ++WN NY +CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPGYG  TNIINGG+ECG+G +S V +RIGF+  +
Sbjct:   45 GSTSEYCGDG--CQSQCSG-SSGGGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNYGQCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRY 287          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.557e-80
Identity = 143/248 (57.66%), Postives = 176/248 (70.97%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARG-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIR-QVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G     C SG        G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYC++R Q S G            PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFKSAIWFWMT Q PKPSCH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +
Sbjct:   52 GKCQSQCPSGPSPKPPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRY 299          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.753e-78
Identity = 139/250 (55.60%), Postives = 177/250 (70.80%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTD---GGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G +   CGSG  C  +  G G     GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYC++R+  +  D           PG+ Y+GRGPIQ++ N NY  CG A+GVDLLNNPDL+ATDPV+SFK+A+WFWMT Q PKPSCH+VII  W PS+ D  A+RLPG+G+ TNIINGG+ECG+G ++ V +RIGF+  +
Sbjct:   51 GNTNDYCGSGN-CQSQCPGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRY 299          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 6.133e-78
Identity = 145/249 (58.23%), Postives = 174/249 (69.88%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGG--WPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PG-QYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G  +Q  GSG   G          G L  +ISRE F  +L +RND  C ARGFYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTGG  W  AP G YAWGYCY R+++  S            PG QY+GRGP+QL+WN NY +CG A+GVDLLNNPDLL++DP +SFKSA WFWMT Q PKPSCH VII  W PS++D  A R+PGYG+ TNIINGG+ECGKGWN+ V +RIGF+  +
Sbjct:   57 GCQSQCSGSGPAPGP---------GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRY 295          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.366e-77
Identity = 132/219 (60.27%), Postives = 167/219 (76.26%), Query Frame = 2
Query:  170 KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXL-PGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            KIISR MF+ +L +RN+  C A+GFYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYC++++ +  S+           PG+ YYGRGP+QL+WN NY  CGEAL V+LL NPDL+ATD VLSFK+A+WFWMT Q PKPSCH+V+   W+PSA D  A RLPGYG+ TN++NGG+ECGKG N  VA+R+GFF  +
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRY 222          
The following BLAST results are available for this feature:
BLAST of CV884960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI1_THECC1.194e-8158.06Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_TOBAC5.926e-8158.63Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC5.926e-8157.87Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_PHAVU1.011e-8057.72Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU6.552e-8057.32Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_PEA6.552e-8056.10Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI4_SOLTU8.557e-8057.66Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_SOLTU2.753e-7855.60Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI1_GOSHI6.133e-7858.23Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIT_CARPA1.366e-7760.27Endochitinase OS=Carica papaya PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884960 ID=CV884960; Name=CV884960; organism=Citrus sinensis; type=EST; length=821bp
GGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAA
CTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATAT
GCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
GGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACT
ATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGC
CATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGAC
GTAAACGCCAGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAA
CGGTGGAATTGAATGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTA
TTGGGTTCTTTACCACTTTCT
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