EY665341

Overview
NameEY665341
Unique NameEY665341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 2.515e-69
Identity = 129/181 (71.27%), Postives = 149/181 (82.32%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPP 570
            MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE  +VYRE+++SPGYYDGRYW MWKLPM+GCT+ATQV            T H   +  FDNKRQ + ISFIA +PP
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSH-IRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.243e-67
Identity = 126/182 (69.23%), Postives = 146/182 (80.22%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPG 573
            MA SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G+VYREH++SPGYYDGRYWTMWKLPM+GC +++QV +          +     +  FDNKRQ + ISFIA +PPG
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAF-IRIIGFDNKRQVQIISFIAYKPPG 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.687e-65
Identity = 121/182 (66.48%), Postives = 141/182 (77.47%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPG 573
            MASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCT+A QV +            +   +  FDN RQ + ISF+A +P G
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCY-GRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.203e-65
Identity = 120/182 (65.93%), Postives = 142/182 (78.02%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPG 573
            MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G VYREH + PGYYDGRYWTMWKLPM+GCT+A QV +            + + +  FDN RQ + ISF+A +PPG
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGY-ARIIGFDNVRQVQCISFLAYKPPG 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.203e-65
Identity = 119/177 (67.23%), Postives = 137/177 (77.40%), Query Frame = 1
Query:   43 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPG 573
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCT++ QV +                +  FDN RQ + ISFI A+PPG
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIG-FDNIRQVQCISFIVAKPPG 179          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.758e-65
Identity = 127/186 (68.28%), Postives = 148/186 (79.57%), Query Frame = 1
Query:   28 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVF-EXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCT+++QV  E          +F    +  FDN RQ + ISFIA +P GF
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF--IRIIGFDNVRQVQCISFIAYKPAGF 183          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.093e-64
Identity = 120/181 (66.30%), Postives = 142/181 (78.45%), Query Frame = 1
Query:   37 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVF-EXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG+VYRE+H+SPGYYDGRYWTMW+LP++G T+++QV  E          +F    +  FDN RQ + ISFIA  P  +
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSF--IRIIGFDNVRQVQCISFIAHTPKNY 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 1.093e-64
Identity = 127/186 (68.28%), Postives = 148/186 (79.57%), Query Frame = 1
Query:   28 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVF-EXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCT+++QV  E          +F    +  FDN RQ + ISFIA +P GF
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSF--IRIIGFDNVRQVQCISFIAYKPAGF 183          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 9.255e-64
Identity = 120/184 (65.22%), Postives = 146/184 (79.35%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW-IRIIGFDNVRQVQCISFIAYKPEGY 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 7.835e-63
Identity = 122/183 (66.67%), Postives = 137/183 (74.86%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSMISS  V T NRA    A MVAPFTGLKS + FP T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCT+A+QV +                +  FDN RQ + ISFIA +PPGF
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPN-GFIRIIGFDNVRQVQCISFIAYKPPGF 178          
The following BLAST results are available for this feature:
BLAST of EY665341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS_FAGCR2.515e-6971.27Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE5.243e-6769.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR1.687e-6566.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES2.203e-6565.93Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA2.203e-6567.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY3.758e-6568.28Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.093e-6466.30Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.093e-6468.28Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU9.255e-6465.22Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOYBN7.835e-6366.67Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665341 ID=EY665341; Name=EY665341; organism=Citrus sinensis; type=EST; length=1029bp
CAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGAAGCAACCCAG
GTTTTTGAAGGAGGTGGGGGAGGTCCCAAAGGAAAACCCACATTTCATTC
TTCCGAATTATCGAAATTTGACAACAAACGTCAAGGGGAGGGCATCAGTT
TCATTGCGGCCCAGCCACCAGGCTTCAAGGTTCCCCAATTTATTTTGGGG
ACCCCCCCCTGGAAATTTTTGGTTGAATTTATAAATATGGGGAAACCCCC
CAAAATGAATCTTCCAATCAGTGGGGGGTCCGGGTTGGGTTTTAATTTTT
ACATTAAGGGCGGGGGGTGCGGCCGGCCCAAAATTTTTTGGGTTTTCCCC
CCCCAAATTTTGGGCTTCTTTTTTTTTTTTTTTAAATAAATTTTAAAAAT
AGAAACCCCTGTTTTTTTCACTTTTTAATAAAACGGGGGGCCCGAGAGAG
TCCCATTTAATAGGGGGGGGGAAAAAAAAGCGGGGATAAAAAAAAAGAGG
TTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGG
GCACCCTCCACAAAAAAAAAAAAACACAGATAAATATAACATAGAATGAC
GTGGGGGGTGCACGGGGGACACGCCCATG
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