CV884906

Overview
NameCV884906
Unique NameCV884906
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884906_ssr211 microsatellite CV884906_ssr211:211..226. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5877 contig Csv1_Contig5877:658..1483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884906 vs. ExPASy Swiss-Prot
Match: ZNTB_DICDI (Protein zntB OS=Dictyostelium discoideum GN=zntB PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 55/169 (32.54%), Postives = 83/169 (49.11%), Query Frame = 2 
Query:  455 LFVVLNEAPNLKVLGLLQGFAAGLMLSISFLDLAHNAINSIGFLKGNLWFFSGVIFFAIVANFIPEPSLAQGSD-------------LTSKKK------NKDEGGKDIMKKHRRQ--------------------------VLFSGIITAVGISLHNFPEGMAVFLGSM 826
            L+V+  +  + K+LG L  F++G+M+ ISF+DL   +I  IGF   N+WFF G+IFFA++  F+P      G                +S+KK      + D  GKD  +K ++Q                          +   GI TA+G+SLHNFPEG+AV+L  +
Sbjct:   30 LYVIFIKQQSHKLLGHLLSFSSGVMIYISFMDLLPESIAEIGFYNANIWFFVGIIFFAVILRFVPHDHDESGDSNHAHSHNGASIEKHSSEKKEVVDDDDDDNNGKDKKQKQQKQKQQKQQQQQKQNIAKSKNKKKSKDDYLNSVGIATAIGVSLHNFPEGVAVYLACL 198
The following BLAST results are available for this feature:
BLAST of CV884906 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZNTB_DICDI6.114e-1732.54Protein zntB OS=Dictyostelium discoideum GN=zntB P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884906 ID=CV884906; Name=CV884906; organism=Citrus sinensis; type=EST; length=826bp
CGCAAATGAAATGAAGAAAGCAAAGGAAAATGAAAGGAAACGAAATGGTG
ATTGATGAGTGATGATTGATGATTGATGAGCACAGCTGATAACATCTACT
TAGCTTAGCGCAGTTGTTTTTGTCATTGCTTGCACCCCGCCATTGAACAA
TCTCTTTCTTCCACTGTACATATTCCAAATATGCTCTCAAATAACGTTTT
ATTTAGTGTTATTAATTAATTAATTAATTCAGTGGAGTCGACAAAAAACC
AAATCCAATTTGTTATTTTGATTTGGTCAATTATTTTAAAACCCAAAACC
CTATAAATATTATTCGCCAACCTCAAATACCCACTACAGTTTTTGAGTTT
TTGAAGGGAAATATAGGACAGCCTAGAGGAAGAAAATGGTTTCTCAGGTT
TTGGTAGCTCTTGGGCTTTCACTTGTGGGTGGATTGAGTACTTCTATTGG
TGCACTTTTTGTTGTTCTTAATGAAGCTCCCAATTTGAAGGTGCTTGGGC
TTTTACAGGGTTTTGCTGCGGGTCTGATGCTGAGCATATCGTTTCTAGAT
TTGGCTCATAATGCCATAAACTCCATTGGCTTTTTGAAAGGGAACCTTTG
GTTTTTTTCTGGTGTTATATTCTTCGCAATCGTTGCCAATTTTATCCCTG
AACCATCACTTGCTCAGGGTTCTGATCTAACAAGTAAAAAGAAAAACAAG
GATGAAGGGGGTAAGGACATTATGAAAAAGCATCGTCGCCAAGTTCTTTT
TAGTGGGATTATTACAGCCGTAGGCATAAGCTTGCACAATTTTCCTGAGG
GAATGGCCGTATTTCTTGGATCAATG
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