CV884902

Overview
NameCV884902
Unique NameCV884902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:93..832. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.384e-83
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 2
Query:   44 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 502
            MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAV+TAKEWTRLYASGA
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASGA 153          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.114e-83
Identity = 151/153 (98.69%), Postives = 153/153 (100.00%), Query Frame = 2
Query:   44 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 502
            MANSNLPRRIIKETQRLLSEPAPGISASPSE+NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWK+NEAEAVETAKEWTRLYASGA
Sbjct:    1 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASGA 153          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.834e-67
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.834e-67
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.834e-67
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.834e-67
Identity = 119/147 (80.95%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.337e-67
Identity = 118/147 (80.27%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WK+NEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.103e-67
Identity = 118/147 (80.27%), Postives = 132/147 (89.80%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LPRRIIKETQRLL+EP PGI A P E N RYF+V+I GP  SP+EGG FKLELFLPEEYPMAAPKVRF+TKIYHPN+DK GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+ WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 249.98 bits (637), Expect = 1.006e-65
Identity = 117/147 (79.59%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            + LP+RIIKETQRL++EPAPGISA+P+ DN RYF V I GP  SP+EGGVF LELFL ++YPM+APKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPL+ ++A+HWKTNE EA+  A+EWTRLYA
Sbjct:    2 ATLPKRIIKETQRLMTEPAPGISATPATDNFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWKTNEKEAMARAREWTRLYA 148          
BLAST of CV884902 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.113e-64
Identity = 112/147 (76.19%), Postives = 133/147 (90.48%), Query Frame = 2
Query:   53 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 493
            S+LPRRIIKETQRL+ EP PGI+A P E+N RYF+V++ GP  SP+EGGVFKLELFLPE+YPM+APKVRF+TKIYHPNID+LGRICLD+LKDKWSPALQIRT+LLSIQALLSAPNPDDPL+ ++A+ WK NEAEA+  A+EWT+ YA
Sbjct:    2 SSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYA 148          
The following BLAST results are available for this feature:
BLAST of CV884902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC35_ARATH2.384e-8398.69Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBC36_ARATH3.114e-8398.69Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBE2N_PONAB1.834e-6780.95Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.834e-6780.95Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.834e-6780.95Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.834e-6780.95Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_RAT5.337e-6780.27Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBE2N_MACFA9.103e-6780.27Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_DICDI1.006e-6579.59Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UBE2N_DROME1.113e-6476.19Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884902 ID=CV884902; Name=CV884902; organism=Citrus sinensis; type=EST; length=739bp
CAACAACAAGAAGGTTAAAAAACAAAAAAAATCGATCTTGGAAATGGCGA
ACAGTAATCTCCCTCGACGTATCATCAAGGAAACACAGCGTCTCCTCAGT
GAACCAGCACCAGGAATAAGTGCATCTCCCTCGGAAGATAATATGCGATA
CTTTAATGTGATGATCCTTGGTCCGACGCAATCTCCATATGAAGGAGGGG
TGTTCAAATTGGAATTATTTTTGCCTGAAGAATATCCAATGGCTGCTCCA
AAGGTCCGATTTCTTACCAAGATATATCATCCTAACATTGATAAGCTTGG
AAGGATTTGTCTTGATATTCTGAAAGACAAGTGGAGTCCAGCTCTCCAGA
TTCGGACTGTACTGTTGAGCATTCAAGCACTTCTGAGTGCTCCTAACCCC
GATGATCCTCTCTCCGAGAACATTGCCAAACACTGGAAAACAAATGAGGC
CGAAGCAGTTGAAACAGCGAAGGAATGGACACGTTTATATGCCAGTGGTG
CTTGATGACATGGTGGAAAATATCACTTCATTCAAATAACAATTGTGCAA
TGTATGCTATTCACTGTCTGTTTAAAATGGAAAATTTGGAAGAATTGAAT
TGATGTTTGAACATTCGGAGTTTGACATTCTGAAAGCTTCCATCTTACCG
CACATGTCAATTATTTTCTTCTTGTGGAAGCCATGTCTTTGAACTTGTAT
GATTAGATGATATACATTGTTTCTCAACTCTTAAATTTC
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