CV884899

Overview
NameCV884899
Unique NameCV884899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig663 contig Csv1_Contig663:470..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_HELMI (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=panB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.221e-35
Identity = 74/144 (51.39%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R +V+AGI VMGH+GLTPQ  + LGGF+ QGK   +A +++E ALAL+  G FS+V+EC         T++L IPTIGIGAGP+C+GQVLV  DLLG+     + +  PKF KQ+A+ G  I  A  +Y  EV +G FPGP HS
Sbjct:  127 RALVDAGIPVMGHIGLTPQTAAQLGGFKVQGKTEDAAQQLLEDALALESAGAFSIVIECVPAGLARTITASLSIPTIGIGAGPYCNGQVLVIQDLLGI-----YDRFVPKFVKQYAQTGPAIRAALNDYAREVADGVFPGPEHS 265          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_DESVV (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=panB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKLG 510
            R +V+AGI VMGH+GLTPQ ++ +GGF+ QG+   +A+++ + ALALQE GCFS+VLEC         T+ L IPTIGIGAG  C GQVLV HD+LG+     + +++P+F K++A +  +  +A   Y  EV  GSFP   H+ + +       F   L K G
Sbjct:  142 RALVDAGIPVMGHLGLTPQRVAEMGGFKVQGRQAEAALRLFDDALALQEAGCFSLVLECVPAPVAEQVTARLHIPTIGIGAGAGCDGQVLVLHDMLGL-----YGELSPRFVKRYADLAGMAGEAVARYAHEVREGSFPAAEHT-FGIDDGQFEAFMAALDKRG 299          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_DESVH (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=panB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.078e-33
Identity = 72/164 (43.90%), Postives = 102/164 (62.20%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKLG 510
            R +V+AGI VMGH+GLTPQ ++ +GGF+ QG+   +A+++ + ALALQE GCFS+VLEC         T+ L IPTIGIGAG  C GQVLV HD+LG+     + +++P+F K++A +  +  +A   Y  EV  GSFP   H+ + +       F   L K G
Sbjct:  142 RALVDAGIPVMGHLGLTPQRVAEMGGFKVQGRQAEAALRLFDDALALQEAGCFSLVLECVPAPVAEQVTARLHIPTIGIGAGAGCDGQVLVLHDMLGL-----YGELSPRFVKRYADLAGMAGEAVARYAHEVREGSFPAAEHT-FGIDDGQFEAFMAALDKRG 299          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_SYNFM (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=panB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.715e-33
Identity = 71/143 (49.65%), Postives = 95/143 (66.43%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            + +VEAGI V GH+GLTPQ+ +  GGF+ QGK   +A  ++E A  L E GCFS+VLE          T A+ +PTIGIGAGP C GQVLV HD+LG+     + +  PKF K++A++G  I +A  +Y+EEV NG+FPGP H
Sbjct:  126 KAMVEAGIPVQGHLGLTPQSSAQFGGFKIQGKTAEAAKILIEDAQILAEAGCFSIVLEGIPSNVAAMVTEAIPVPTIGIGAGPDCDGQVLVIHDVLGL-----YDRFVPKFVKKYAQLGLTIKEALTKYREEVENGTFPGPEH 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_MOOTA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=panB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.298e-32
Identity = 72/148 (48.65%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    7 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +   R IV AGI VMGH+GLTPQ+   LGGFR QG++     K+   A AL E G F++VLEC         T+AL +PTIGIGAGP C GQVLVYHDLLG+       +  PKF KQ+A + +    A  +Y++EV  G FP   HS
Sbjct:  125 VPTVRAIVNAGIPVMGHLGLTPQSAVQLGGFRVQGRSEAEGEKIAADAAALVEAGVFALVLECVPADLARRITAALPVPTIGIGAGPDCDGQVLVYHDLLGLFD-----RFRPKFVKQYANLAEATVAALEKYRDEVRQGKFPDQEHS 267          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_ENTFA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Enterococcus faecalis GN=panB PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.490e-31
Identity = 68/147 (46.26%), Postives = 98/147 (66.67%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMS 465
            IV+A I VM H+GLTPQ+++  GGF+ QGK+  +A +++  A A+++ G F+VVLEC         +  + IPTIGIGAG  C GQ+LVY D+LGM     ++  TPKF K++A + + +NKA  +Y EEV +G FPGP H  +K+S
Sbjct:  127 IVKASIPVMAHIGLTPQSVNAFGGFKVQGKDKEAAKELIRAAKAVEKAGAFAVVLECVPTKLAELISKEISIPTIGIGAGAGCDGQILVYQDMLGM-----YSDFTPKFVKKYANLSEEMNKAFTKYIEEVKDGVFPGPEHG-FKIS 267          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOTH (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=panB PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.541e-31
Identity = 74/170 (43.53%), Postives = 102/170 (60.00%), Query Frame = 1
Query:    7 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKLGFD 516
            I   + I+ AGI V+GH+G TPQ+I+V GG + QGK + +A K+   AL LQ+ G F+VVLEC         +  L IPTIGIG+GP C GQVLV HDL GM +       TPK  K++A +G+ ++ A   Y +EV NG FP   +S +K+     +   +EL K+ FD
Sbjct:  123 IENVKAIISAGIPVVGHLGYTPQSINVFGGHKAQGKTIDTAKKIYRDALLLQKAGVFAVVLECVPYKLAAFISKRLDIPTIGIGSGPDCDGQVLVIHDLTGMFK-----DFTPKHVKKYAEIGETVSTAVKSYIDEVKNGVFPTEKNS-FKVD----DWIIDELDKVRFD 282          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_SYNWW (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=panB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 1
Query:    4 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            R+   + I++A I VMGH+GLTPQ++   GGF+ QGK++ +A K+VE A AL + G + +VLEC         T  + +PTIGIGAGP+C GQVLV +D+LGM +       TPKF ++FA +  +I +A   YK EV  G+FP   H
Sbjct:  121 RVDTVKAILDAQIPVMGHIGLTPQSVHQFGGFKVQGKDLETAKKLVEDARALDQAGVYCIVLECVPSELARRVTEEISVPTIGIGAGPYCDGQVLVINDMLGMFR-----GFTPKFVRKFANLEPLIMEALKNYKAEVEAGTFPAEEH 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOB8 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=panB PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.318e-31
Identity = 71/163 (43.56%), Postives = 104/163 (63.80%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKL 507
            + IV+A I VMGH+GLTPQ+++  GGF+ QGK+ ++A ++++ A+ +++ G FS+VLE          T+A+ IPTIGIGAG +C GQ+LVY D+LGM          PKF KQ+A VG+V+ +A   Y +EV  G FP   H+ +K+         NEL+KL
Sbjct:  125 KAIVDAQIPVMGHIGLTPQSVNAFGGFKVQGKSESAAKQLIDDAVLIEKAGAFSIVLEGIPEKVAELITNAVSIPTIGIGAGKYCDGQILVYQDMLGMFN-----DFVPKFVKQYANVGNVMREAISSYVKEVQAGDFPEEKHT-FKIDE-------NELKKL 274          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLONN (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium novyi (strain NT) GN=panB PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.261e-30
Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    7 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            I   + IV A I VM H+GLTPQ+I+V GGF+ QGK+   A K++E A  ++E G F++VLEC         T A+ IPTIGIGAG  C GQ+LVY D+LGM      + ++PKF K+FA VG+++      Y +EV  G+FP   H
Sbjct:  121 IEQIKAIVNAQIPVMAHIGLTPQSINVFGGFKVQGKDEEKAQKLIEDAKKIEEAGAFAIVLECVPAKLAELITKAVSIPTIGIGAGAGCDGQILVYQDMLGMF-----SDMSPKFVKKFADVGELMKDGFKAYIKEVQEGTFPSKEH 262          
The following BLAST results are available for this feature:
BLAST of CV884899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PANB_HELMI2.221e-3551.393-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_DESVV2.078e-3343.903-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_DESVH2.078e-3343.903-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_SYNFM2.715e-3349.653-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_MOOTA2.298e-3248.653-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_ENTFA1.490e-3146.263-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOTH2.541e-3143.533-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_SYNWW3.318e-3145.273-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOB83.318e-3143.563-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLONN1.261e-3046.263-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884899 ID=CV884899; Name=CV884899; organism=Citrus sinensis; type=EST; length=823bp
TCACGAATTACAGCAGCAAGAGGAATTGTTGAAGCTGGAATTGCAGTTAT
GGGGCATGTGGGACTTACCCCTCAAGCCATTAGTGTTCTTGGGGGATTCA
GGCCTCAAGGGAAAAATGTTACTAGTGCTGTCAAGGTTGTGGAGACTGCT
CTGGCTTTGCAAGAAGTCGGATGTTTCTCAGTTGTTTTGGAATGTGTGCC
CCCGCCTGTGGCTGCTGCAGCTACATCTGCTCTTCAAATTCCTACCATTG
GCATTGGAGCTGGACCCTTCTGCAGTGGCCAGGTGCTAGTTTACCATGAT
CTTTTAGGGATGATGCAACACCCACATCATGCCAAGGTCACTCCGAAGTT
CTGCAAGCAGTTTGCACGTGTTGGAGATGTCATAAACAAAGCTCCATTGG
AGTACAAGGAAGAAGTAACAAATGGTTCATTCCCTGGTCCCAGTCACAGC
CCTTATAAAATGTCTAGTAGTGATTGTAATGGTTTCTTCAATGAGTTACA
GAAGCTGGGTTTCGACAAAGCAGCAGCGGTGGCTGCTGAAGCAGCTGAGA
AGATTGATACAGCTAAATAACCTGATGAAGGAAATTCAGCAAGGCAATGA
ATATGCTCAATCCAGCCAGAGAGCCACTTTCACTCGGCTCCTCTTTCGCT
GATTAAACAAAGTGTAGAAGCTACAAATAACAGTGGCGTTTTGGGCTGTT
TTGGTTGTCTTATGACATTAACTTATTTGATTAGCATGGTTGTAGTTTTT
GAACAAACTGAAATACACAGAATAAATAGATAAAGAAGACGCCGTTACTT
ATACAATGGCGATACTTTTACCT
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