CV884884

Overview
NameCV884884
Unique NameCV884884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1901 contig Csv1_Contig1901:347..1087. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV1_ARATH (Histone H2A variant 1 OS=Arabidopsis thaliana GN=H2AV PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.318e-57
Identity = 111/119 (93.28%), Postives = 117/119 (98.32%), Query Frame = 3
Query:  102 NKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            NKDKDKDKK+PISRS+RAGIQFPVGRIHR LK+R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK+
Sbjct:   18 NKDKDKDKKKPISRSARAGIQFPVGRIHRQLKTRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKE 136          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV1_ORYSJ (Probable histone H2A variant 1 OS=Oryza sativa subsp. japonica GN=Os03g0162200 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.767e-54
Identity = 107/118 (90.68%), Postives = 114/118 (96.61%), Query Frame = 3
Query:  108 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            DKDKDKK+ P+SRSSRAG+QFPVGRIHR LKSR +AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT+K+
Sbjct:   21 DKDKDKKKAPVSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTSKE 138          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.358e-53
Identity = 105/117 (89.74%), Postives = 110/117 (94.02%), Query Frame = 3
Query:  108 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            +KD  KK+ ISRSSRAGIQFPVGRIHR LK R++AHGRVGATAAVY ASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL+NK TKD
Sbjct:   20 NKDSVKKKSISRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLVNKVTKD 136          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.386e-53
Identity = 103/117 (88.03%), Postives = 112/117 (95.73%), Query Frame = 3
Query:  108 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            DKDKDKK+PI+RSSRAG+QFPVGR+HR LK+R  AHGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRI+PRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK+ K+
Sbjct:   18 DKDKDKKKPITRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSAKE 134          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV2_ORYSJ (Probable histone H2A variant 2 OS=Oryza sativa subsp. japonica GN=Os10g0418000 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.728e-53
Identity = 105/118 (88.98%), Postives = 113/118 (95.76%), Query Frame = 3
Query:  108 DKDKDKKR-PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            DKDKD+K+ P+SRSSRAGIQFPVGRIHR LK R++A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKT K+
Sbjct:   22 DKDKDRKKAPVSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTAKE 139          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV3_ORYSJ (Probable histone H2A variant 3 OS=Oryza sativa subsp. japonica GN=Os03g0743400 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.080e-51
Identity = 102/117 (87.18%), Postives = 110/117 (94.02%), Query Frame = 3
Query:  108 DKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD 458
            +KDK KK P+SRSSRAG+QFPVGRIHR LK R  A+GRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK++K+
Sbjct:   21 EKDKGKKAPVSRSSRAGLQFPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSSKE 137          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AZ_CHICK (Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 446
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKTKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AV_DROME (Histone H2A.v OS=Drosophila melanogaster GN=His2Av PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.118e-48
Identity = 97/114 (85.09%), Postives = 104/114 (91.23%), Query Frame = 3
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 446
            KD  K K + +SRS+RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKAKAVSRSARAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AZ_SHEEP (Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.460e-48
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 446
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
BLAST of CV884884 vs. ExPASy Swiss-Prot
Match: H2AZ_RAT (Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.460e-48
Identity = 97/114 (85.09%), Postives = 103/114 (90.35%), Query Frame = 3
Query:  105 KDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 446
            KD  K K + +SRS RAG+QFPVGRIHRHLKSR  +HGRVGATAAVY A+ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct:    8 KDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 121          
The following BLAST results are available for this feature:
BLAST of CV884884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 243
Match NameE-valueIdentityDescription
H2AV1_ARATH1.318e-5793.28Histone H2A variant 1 OS=Arabidopsis thaliana GN=H... [more]
H2AV1_ORYSJ6.767e-5490.68Probable histone H2A variant 1 OS=Oryza sativa sub... [more]
H2AV2_ARATH3.358e-5389.74Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2AV3_ARATH4.386e-5388.03Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ORYSJ5.728e-5388.98Probable histone H2A variant 2 OS=Oryza sativa sub... [more]
H2AV3_ORYSJ1.080e-5187.18Probable histone H2A variant 3 OS=Oryza sativa sub... [more]
H2AZ_CHICK1.118e-4885.09Histone H2A.Z OS=Gallus gallus GN=H2AFZ PE=1 SV=3[more]
H2AV_DROME1.118e-4885.09Histone H2A.v OS=Drosophila melanogaster GN=His2Av... [more]
H2AZ_SHEEP1.460e-4885.09Histone H2A.Z OS=Ovis aries GN=H2AFZ PE=2 SV=3[more]
H2AZ_RAT1.460e-4885.09Histone H2A.Z OS=Rattus norvegicus GN=H2afz PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884884 ID=CV884884; Name=CV884884; organism=Citrus sinensis; type=EST; length=740bp
AAAATCTCTCTCTTCTTTTCTCTTCGGCTTCCAAGATTTTCAGGTGAGAC
ATGGCGGGAAAAGGAGGGAAGGGTCTTTTAGCAGCGAAAACCACGGCTGG
TAACAAGGATAAGGACAAGGATAAGAAAAGGCCAATTTCCAGGTCATCTC
GTGCCGGTATCCAGTTTCCTGTGGGTCGCATTCACCGCCACCTCAAGTCA
AGGATTGCTGCCCATGGACGTGTTGGGGCCACTGCTGCTGTTTATTTGGC
TTCAATCCTTGAATACCTGACTGCTGAGGTTCTTGAGCTGGCTGGGAATG
CAAGCAAGGATCTGAAGGTGAAGAGAATTACGCCAAGGCATCTGCAGCTT
GCTATTAGAGGAGATGAAGAGCTGGACACTCTCATCAAGGGGACCATTGC
TGGAGGTGGTGTGATCCCTCACATTCACAAATCACTTATCAACAAAACTA
CCAAAGATTGAGTTCTTTGCGTGGTTTTGAATCGCTCTCTAGTGATGACT
TTGGTTTTATGTGTTACTGTTTTCCAGTTAGGGTAATCTTGGACTCATTT
TGTGTTTTTTAGTAGGTTGTCTAGAATATCTTGGTTAGTACATATGGCTT
GACTCTTAGGTTTGTCCTCTGGATCTAATATACTCATGTTTGGAGTAGGA
ATGTTGTTCGTTATGTACTATTTTGTCTTGTTTCTTTTTCTTTCTGTCAC
TGTTTCCAATTCATGTTCTCTCCTGCTTTGCTTCCTGAAA
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