CV884858

Overview
NameCV884858
Unique NameCV884858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 5.069e-88
Identity = 160/192 (83.33%), Postives = 177/192 (92.19%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGMD TTDKLRSLV+KW +LIEA+VDVKTTDN+TLRMFCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIM+ QA +CDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPA+E  PEA TEVIGA
Sbjct:   70 LADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEA-TEVIGA 260          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 7.319e-87
Identity = 158/192 (82.29%), Postives = 173/192 (90.10%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E++A+RKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLRMFCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV KFI E+IG+EIEKAT SIYPLQNVFIRKVKILK+PKFDLGKLMEVHGDYSEDVG K+E PADE + E   E++GA
Sbjct:   70 LADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 9.559e-87
Identity = 159/192 (82.81%), Postives = 171/192 (89.06%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGMDFTTDKLRSLVRKW TLIEA+VDVKTTDNYTLR+FCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKAT SIYPLQNV+IRKVKILKAPKFDLGKLMEVHGDYSEDVG K+ERPADEP+ E  TEVIGA
Sbjct:   70 LADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 317.005 bits (811), Expect = 8.092e-86
Identity = 158/193 (81.87%), Postives = 173/193 (89.64%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL N+E++AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD YTLRMFCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:   70 LADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 315.849 bits (808), Expect = 1.803e-85
Identity = 157/193 (81.35%), Postives = 175/193 (90.67%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSE-DVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E+H++RKIRLRAED+QGKNVLTNFWGMDFTTDKLRSLVRKW +LIEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIM+ QA SCDLK LV+KFI E IGREIEKAT SIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY+E D+G K++RPA+E + E PTEVIGA
Sbjct:   70 LADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAE-PTEVIGA 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.993e-84
Identity = 157/192 (81.77%), Postives = 171/192 (89.06%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GMDFTTDKLRSLVRKW TLIEA+VDVKTTD+YTLRMFCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNVFIRKVKILKAPKFD+GKLMEVHGDYSEDVGVK+ERP +E + E  TEV+GA
Sbjct:   70 LADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 311.997 bits (798), Expect = 2.603e-84
Identity = 155/193 (80.31%), Postives = 172/193 (89.12%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E++AYRKIRLRAEDVQG+NVL  FWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IM+ +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+VHGDYS EDVGVK++RPADE   E PTE+IGA
Sbjct:   70 LADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 3.400e-84
Identity = 154/192 (80.21%), Postives = 171/192 (89.06%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLV+KW TLIEA+VDVKTTD+YTLRMFCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKAT SI+PLQNV+IRKVKILKAPKFD+GKLMEVHGDYSEDVGVK++RPADE + EA  E+ GA
Sbjct:   70 LADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADETVAEAEPEIPGA 261          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 3.518e-81
Identity = 148/181 (81.77%), Postives = 164/181 (90.61%), Query Frame = -2
Query:  287 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMIAQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKMERPADE 826
            L DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM FTTDKLRSLV+KW TLIEA+VDVKTTD Y LR+FCIGFTKR PNQVKRTCYAQASQIRQIRRKM EIM  QA+SCDLK LV KFI E+IG+EIEKAT SI+PLQNVF+RKVKILKAPKFDLGKLMEVHGDY+ ED+G K++RPA++
Sbjct:   70 LADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
BLAST of CV884858 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 4.595e-81
Identity = 154/194 (79.38%), Postives = 172/194 (88.66%), Query Frame = -2
Query:  251 LGDLHNEEEHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWHTLIEAYVDVKTTDNYTLRMFCIGFTKRLPNQVKRTCYAQASQIRQIRRKMREIMI-AQAASCDLKGLVEKFIAEIIGREIEKATLSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDY-SEDVGVKMERPADEPIPEAPTEVIGA 826
            L DL+ +E+ AYRKIRLRAEDVQG+NVLT FWGMDFTTDKLRSLV+KW TLIE++VDVKTTDNYTLR+FCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIMI  +A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAPKFDL KLMEVHGDY +EDVGVK++RPADE + E PTE+IGA
Sbjct:   70 LADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE-VVEEPTEIIGA 262          
The following BLAST results are available for this feature:
BLAST of CV884858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A_HELAN5.069e-8883.3340S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR7.319e-8782.2940S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A1_VITVI9.559e-8782.8140S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A2_ARATH8.092e-8681.8740S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_CATRO1.803e-8581.3540S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_DAUCA1.993e-8481.7740S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A1_ARATH2.603e-8480.3140S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_TOBAC3.400e-8480.2140S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_ORYSJ3.518e-8181.7740S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_BRARA4.595e-8179.3840S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A09_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884858 ID=CV884858; Name=CV884858; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTTTTAAAGATAGATGCTTCTCTAAGCTGGATTTGAAGAAAATTA
GAATAATGTATCTAATCCACTGGAATAAAGAATAAGGTAATCATGTTCAT
ACCACAGAAACCGCTGCAGCCATCTCAAATATCAGCTAGAATAAAATATG
TAAACTCAAAACAAATTTGAGTTCATCACAAACAAAACTGCCCAAAAATT
ACTAGATCTGATTGGTTATAAAGACAAACTACAAAAATTTTCTTTATTCA
AGCTCCAATCACTTCAGTTGGTGCTTCAGGAATGGGCTCATCAGCTGGCC
TTTCCATCTTTACACCAACATCCTCAGAGTAATCACCATGAACCTCCATC
AACTTTCCAAGATCAAACTTAGGAGCTTTCAAGATCTTCACTTTGCGGAT
GAAAACATTTTGTAAGGGGTATATGCTTAAGGTTGCCTTCTCAATCTCTC
TTCCAATTATTTCAGCAATGAACTTTTCGACCAAGCCCTTAAGATCACAC
GATGCTGCCTGAGCAATCATGATCTCCCTCATCTTGCGGCGAATCTGTCT
AATCTGGCTGGCCTGTGCGTAGCAAGTCCTCTTAACCTGATTTGGAAGTC
TCTTGGTGAATCCAATGCAGAACATCCTCAATGTGTAGTTATCAGTGGTC
TTGACATCCACGTAAGCTTCAATCAACGTATGCCACTTCCTAACCAAGGA
CCTCAGCTTGTCTGTAGTGAAATCCATGCCCCAAAAGTTTGTCAAAACAT
TCTTCCCTTGGACATCTTCAGCTCTTAGTCTGATCTTCCTGTAAGCATGC
TCTTCTTCATTATGTAGATCACCTAAT
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