CV884853

Overview
NameCV884853
Unique NameCV884853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11181 contig Csv1_Contig11181:72..997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10C_ARATH (20 kDa chaperonin, chloroplastic OS=Arabidopsis thaliana GN=CPN21 PE=1 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 2.417e-97
Identity = 184/253 (72.73%), Postives = 208/253 (82.21%), Query Frame = -2
Query:  119 MATAQLTASSIKVPARSLTSFDGLRPSSVKFASVG-GAASQRSFRRLXXXXXXXXAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 874
            MA  QLTAS + + ARSL S DGLR SSVKF+S+  G   Q  FRRL        APKYTSIKPLGDRVLVKIK  EEKT GGI LPS AQ+KPQ GEVVAVGEG+T+GK K+DI+V  G Q+IYSKYAGTE+EFN   HLI++EDD+VGILET++IKDLKPLNDRVFIKVAEAEE TAGGLLLTE +KEKPSIGTVIAVGPG LDEEG   PL ++ G+TV+YSKYAGNDFKG DG+NYIALRAS+VMA+LS
Sbjct:    1 MAATQLTASPVTMSARSLASLDGLRASSVKFSSLKPGTLRQSQFRRLVVKAASVVAPKYTSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPTGAQIIYSKYAGTEVEFNDVKHLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPVSTGSTVLYSKYAGNDFKGKDGSNYIALRASDVMAILS 253          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10C_SPIOL (20 kDa chaperonin, chloroplastic OS=Spinacia oleracea GN=CPN21 PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 7.550e-83
Identity = 156/256 (60.94%), Postives = 194/256 (75.78%), Query Frame = -2
Query:  119 MATAQLTASSIKVPARSLTSFDGLRPSS----VKFASVGGAASQRSFRRLXXXXXXXXAPKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVLS 874
            MA   LT++S  +   +L SF+GLR +S    +  +    + + RSFR L          KYTS+KPLGDRVL+K K VEEKT  GIFLP+AAQ KPQ+GEVVA+G GK VG  KL ++VK G +V+YSKY GTE+E +G++HLIV+EDD++GILETD++KDLKPLNDR+ IKVAE E  T+GGLLL E+SKEKPS GTV+A GPG LDEEGNR PL +  GNTV+YSKYAGNDFKG DG++Y+ LR S+VMAVLS
Sbjct:    1 MAATHLTSTS-SLTINTLPSFEGLRSASGISKINVSVAYPSFTSRSFRGLVVRAASITTSKYTSVKPLGDRVLIKTKIVEEKTTSGIFLPTAAQKKPQSGEVVAIGSGKKVGDKKLPVAVKTGAEVVYSKYTGTEIEVDGSSHLIVKEDDIIGILETDDVKDLKPLNDRLLIKVAEVENKTSGGLLLAESSKEKPSFGTVVATGPGVLDEEGNRIPLPVCSGNTVLYSKYAGNDFKGVDGSDYMVLRVSDVMAVLS 255          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_NATTJ (10 kDa chaperonin OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=groS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 49/94 (52.13%), Postives = 72/94 (76.60%), Query Frame = -2
Query:  419 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 697
            ++KPLGDR+++KI   EEKT+ GI LP  A+ KPQ GEVVAVG GKT+   +K++  VK G +V+YSK+AG E+E +G  +LI+R+DD++ ++E
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVEVDGEEYLIMRQDDILAVIE 95          

HSP 2 Score: 86.2705 bits (212), Expect = 2.735e-16
Identity = 41/94 (43.62%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +LKPL DR+ IK+ EAEE T  G++L E +KEKP  G V+AVG G   ++G++    +  G+ V+YSK+AGN+ +  DG  Y+ +R  +++AV+
Sbjct:    2 NLKPLGDRIVIKILEAEEKTESGIVLPEKAKEKPQEGEVVAVGSGKTLDDGSKVEPEVKAGDKVVYSKFAGNEVE-VDGEEYLIMRQDDILAVI 94          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_THEPX (10 kDa chaperonin OS=Thermoanaerobacter sp. (strain X514) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.432e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_THEP3 (10 kDa chaperonin OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=groS PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.432e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGQY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_THEBR (10 kDa chaperonin OS=Thermoanaerobacter brockii GN=groS PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.432e-22
Identity = 48/92 (52.17%), Postives = 69/92 (75.00%), Query Frame = -2
Query:  419 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 694
            +KPLGDRV+VK+   EE T GG+ LP  A+ KPQ GEVVAVG G+ +   K+++ VK G +VI+SKYAGTE++ +G  +L++RE D++ I+E
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEYIDGKKVELEVKVGDRVIFSKYAGTEVKLDGEEYLLLRESDILAIIE 94          

HSP 2 Score: 83.5741 bits (205), Expect = 1.773e-15
Identity = 43/93 (46.24%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            LKPL DRV +KV +AEE T GG++L   +KEKP  G V+AVG G    +G +  L +  G+ V++SKYAG + K  DG  Y+ LR S+++A++
Sbjct:    3 LKPLGDRVVVKVIQAEEVTKGGVILPGTAKEKPQQGEVVAVGTGEY-IDGKKVELEVKVGDRVIFSKYAGTEVK-LDGEEYLLLRESDILAII 93          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_RHOMR (10 kDa chaperonin OS=Rhodothermus marinus GN=groS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.707e-22
Identity = 46/95 (48.42%), Postives = 70/95 (73.68%), Query Frame = -2
Query:  410 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILETDE 694
            IKPL DRV++K +  EEKT+ G+++P  A+ KPQ G V+AVG G+     K+++SVK G +V+Y KYAGTE+  +G  +LI+RE D++GI+E ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRVENGTKIEMSVKEGDKVLYGKYAGTEITIDGEEYLIMRETDILGIIEEEK 100          

HSP 2 Score: 80.4925 bits (197), Expect = 1.501e-14
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  122 LKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 400
            +KPL+DRV IK    EE T  GL + + +KEKP  GTVIAVGPG + E G +  +S+  G+ V+Y KYAG +    DG  Y+ +R ++++ ++
Sbjct:    6 IKPLSDRVVIKPEPPEEKTESGLYIPDTAKEKPQRGTVIAVGPGRV-ENGTKIEMSVKEGDKVLYGKYAGTEIT-IDGEEYLIMRETDILGII 96          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  122 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 409
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  422 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 700
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.162e-21
Identity = 46/96 (47.92%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  122 IKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 409
            +  +KPL DR+F+KVAE+EE TAGG+LL + ++EKP +G V AVGPG L E+G R+P+ +  G+ V+YSKYAG + K + G +Y+ L   +++A++
Sbjct:    8 VSTVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLA-GEDYVLLSEKDILAIV 102          

HSP 2 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  422 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 700
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CV884853 vs. ExPASy Swiss-Prot
Match: CH10_DESVV (10 kDa chaperonin OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=groS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.824e-21
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = -2
Query:  419 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 697
            ++KPL DRVLVK    EEKT GG+++P  A+ KP  GEVVA G GKT    KL  ++VK G  V+++KYAGTE++ +G  HL++REDD++ I+E
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIKIDGVEHLVMREDDILAIIE 95          

HSP 2 Score: 89.7373 bits (221), Expect = 2.474e-17
Identity = 40/94 (42.55%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  122 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGTVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIALRASEVMAVL 403
            +LKPLNDRV +K  E+EE TAGGL + + +KEKPS G V+A GPG   ++G    +++  G+ V+++KYAG + K  DG  ++ +R  +++A++
Sbjct:    2 NLKPLNDRVLVKRLESEEKTAGGLYIPDTAKEKPSRGEVVAAGPGKTADDGKLVAMTVKAGDMVLFNKYAGTEIK-IDGVEHLVMREDDILAII 94          
The following BLAST results are available for this feature:
BLAST of CV884853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH10C_ARATH2.417e-9772.7320 kDa chaperonin, chloroplastic OS=Arabidopsis th... [more]
CH10C_SPIOL7.550e-8360.9420 kDa chaperonin, chloroplastic OS=Spinacia olera... [more]
CH10_NATTJ4.357e-2252.1310 kDa chaperonin OS=Natranaerobius thermophilus (... [more]
CH10_THEPX7.432e-2252.1710 kDa chaperonin OS=Thermoanaerobacter sp. (strai... [more]
CH10_THEP37.432e-2252.1710 kDa chaperonin OS=Thermoanaerobacter pseudethan... [more]
CH10_THEBR7.432e-2252.1710 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]
CH10_RHOMR9.707e-2248.4210 kDa chaperonin OS=Rhodothermus marinus GN=groS ... [more]
CH10_THEVL2.162e-2147.9210 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB2.162e-2147.9210 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_DESVV2.824e-2152.1310 kDa chaperonin OS=Desulfovibrio vulgaris subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011A05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884853 ID=CV884853; Name=CV884853; organism=Citrus sinensis; type=EST; length=923bp
CCGCATTCTTTAGTTCAATAAGATTACAGTCAAAATCCGTATGCCTTGAG
GCAACTCAACCATAAAATTCAATTCACTAATACATATAAAGCCTCGCTCA
AGTAAACACAGACAACTAAGAGAGCACAGCCATCACTTCAGAAGCTCTTA
AAGCAATGTAGTTGGTACCATCACTGCCCTTGAAGTCATTCCCTGCATAC
TTCGAATACATCACCGTGTTCCCTGGTGCAATGGATAGAGGTTTCCTATT
ACCTTCCTCATCTAGAGGACCGGGTCCAACAGCAATGACCGTTCCAATGG
AAGGTTTCTCCTTGCTTGCCTCCGTCAACAACAAACCTCCAGCAGTTGTC
TCCTCAGCCTCAGCAACCTTGATGAAAACTCTGTCATTAAGGGGCTTAAG
ATCCTTGATTTCATCTGTTTCAAGAATGCCAACTACGTCATCCTCCCTCA
CTATGAGATGATTTGCGCCGTTGAACTCCAACTCAGTCCCTGCATACTTC
GAATAGATGACCTGGGTCCCAGGCTTCACAGATATGTCCAGTTTAGCCTT
CCCAACTGTCTTCCCCTCGCCAACAGCTACCACCTCACCTGCTTGAGGCT
TTGTTTGAGCTGCAGATGGCAGAAAAATACCACCATCAGTTTTCTCCTCT
ACAGTCTTGATTTTCACCAGCACTCTATCACCCAAAGGTTTAATTGAAGT
GTACTTGGGAGCCACGACTGCAGCGGCTTTAACGACCAAGCGACGGAAAG
AGCGTTGGCTGGCAGCACCTCCGACGGAAGCGAACTTGACGGAAGACGGT
CTGAGACCATCGAATGAAGTCAAGCTCCTTGCTGGAACCTTAATTGATGA
CGCTGTTAGCTGAGCTGTCGCCATCTTGCAGATGCAGAGAGAGCGAGAGA
GATTCTGATTGGAAATGATAAGC
back to top