CX673770

Overview
NameCX673770
Unique NameCX673770
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 8.816e-84
Identity = 157/203 (77.34%), Postives = 168/203 (82.76%), Query Frame = 2 
Query:  173 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL---XXXXXXXXXXXXXXXXXXTANGPTNGLANG-VRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFCVPFREQLL+YY++NK++ DAEENL+TCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+LLNE+VDIL                      ANG     ANG V KEP+VTWVH  FQGILTNETRCLRCETVTARDETF DLS
Sbjct:    1 MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLMTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDILEKEAKATKTEHETSSSSSPEKIANGLKVPQANGVVHKEPIVTWVHNIFQGILTNETRCLRCETVTARDETFLDLS 203
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP4_ARATH (Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana GN=UBP4 PE=1 SV=2)

HSP 1 Score: 309.686 bits (792), Expect = 1.151e-83
Identity = 158/200 (79.00%), Postives = 166/200 (83.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDIL-XXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGAAGSKLEKALGDQFPEGERYFG ENFGNTCYCNSVLQALYFC PFREQLL++Y+NNK   DAEENLLTCLADLF+QI +QKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLN+LLNELV+IL                    AN     LANGV KEP+VTWVHK FQGILTNETRCLRCETVTARDETF DLS
Sbjct:    1 MGAAGSKLEKALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNK--ADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVEILEKETQATKADNETSSSPEKIANVLKAPLANGVHKEPIVTWVHKIFQGILTNETRCLRCETVTARDETFLDLS 198
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP12_SALSA (Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.263e-55
Identity = 112/200 (56.00%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGA  S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE++L Y S  +     +ENLLTCLADLF  I  QK+K GVI PK+F+ RL+K+NELF +YM QDAHEFLN+LLN + D+L                   ANG  +   +     P  TWVH+ FQG LTNETRCL CET++++DE F DLS
Sbjct:   16 MGANASALEKEIGSEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQPRR----KENLLTCLADLFHSIANQKRKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADLL------QEERKQDKTNGRLANGSLDSQNHNSNAPPPSTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLS 205
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP12_MOUSE (Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 2.263e-55
Identity = 114/200 (57.00%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGA  S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE++L Y S  +     +ENLLTCLADLF  I  QKKK GVI PK+F+ RL+K+NELF +YM QDAHEFLN+LLN + DIL                    NG  +   N    +P  TWVH+ FQG LTNETRCL CET++++DE F DLS
Sbjct:   16 MGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK----KENLLTCLADLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADIL------QEERKQEKQNGRLRNGDVDNEDNNSTPDP--TWVHEIFQGTLTNETRCLTCETISSKDEDFLDLS 203
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP46_PONAB (Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.041e-55
Identity = 114/200 (57.00%), Postives = 133/200 (66.50%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MG   S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE +L Y +  K     +ENLLTCLADLF  I  QKKK GVI PK+F+ RL+K+N+LF +YM QDAHEFLN+LLN + DIL                    NG  N  A     +P +TWVH+ FQG LTNETRCL CETV+++DE F DLS
Sbjct:   12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKK----KENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADIL------QEEKKQEKQNGKLKNGNMNEPAE--NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLS 199
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP46_MOUSE (Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.041e-55
Identity = 114/200 (57.00%), Postives = 133/200 (66.50%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MG   S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE +L Y +  K     +ENLLTCLADLF  I  QKKK GVI PK+F+ RL+K+N+LF +YM QDAHEFLN+LLN + DIL                    NG  N  A     +P +TWVH+ FQG LTNETRCL CETV+++DE F DLS
Sbjct:   12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKK----KENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADIL------QEEKKQEKQNGKLKNGNMNEPAE--NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLS 199
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP46_HUMAN (Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.041e-55
Identity = 114/200 (57.00%), Postives = 133/200 (66.50%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MG   S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE +L Y +  K     +ENLLTCLADLF  I  QKKK GVI PK+F+ RL+K+N+LF +YM QDAHEFLN+LLN + DIL                    NG  N  A     +P +TWVH+ FQG LTNETRCL CETV+++DE F DLS
Sbjct:   12 MGTNASALEKDIGPEQFPINEHYFGLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKK----KENLLTCLADLFHSIATQKKKVGVIPPKKFISRLRKENDLFDNYMQQDAHEFLNYLLNTIADIL------QEEKKQEKQNGKLKNGNMNEPAE--NNKPELTWVHEIFQGTLTNETRCLNCETVSSKDEDFLDLS 199
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UBP12_DANRE (Ubiquitin carboxyl-terminal hydrolase 12 OS=Danio rerio GN=usp12 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.041e-55
Identity = 114/200 (57.00%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGA  S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE++L Y S  +     +ENLLTCLADLF  I  QK+K GVI PK+F+ RL+K+NELF +YM QDAHEFLN+LLN + D+L                   ANG T    N     P  TWVH+ FQG LTNETRCL CET++++DE F DLS
Sbjct:   16 MGANASALEKEIGSEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKILAYRSQPRR----KENLLTCLADLFHSIANQKRKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADLL------QEERKQDKQNGKLANG-TLDSQNNNSTPPSTTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLS 204
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 8.599e-55
Identity = 113/200 (56.50%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGA  S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE++L Y S  +     +ENLLTCL+DLF  I  QKKK GVI PK+F+ RL+K+NELF +YM QDAHEFLN+LLN + DIL                    NG  +   N    +P  TWVH+ FQG LTNETRCL CET++++DE F DLS
Sbjct:   16 MGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK----KENLLTCLSDLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADIL------QEERKQEKQNGRIPNGNIDNENNNSAPDP--TWVHEIFQGTLTNETRCLTCETISSKDEDFLDLS 203
[Close]
BLAST of CX673770 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 1.123e-54
Identity = 113/200 (56.50%), Postives = 134/200 (67.00%), Query Frame = 2 
Query:  173 MGAAGSKLEKALG-DQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLDYYSNNKNLGDAEENLLTCLADLFTQIRAQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILXXXXXXXXXXXXXXXXXXTANGPTNGLANGVRKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLS 769
            MGA  S LEK +G +QFP  E YFGL NFGNTCYCNSVLQALYFC PFRE++L Y S  +     +ENLLTCL+DLF  I  QKKK GVI PK+F+ RL+K+NELF +YM QDAHEFLN+LLN + DIL                    NG  +   N    +P  TWVH+ FQG LTNETRCL CET++++DE F DLS
Sbjct:   16 MGANASALEKEIGPEQFPVNEHYFGLVNFGNTCYCNSVLQALYFCRPFREKVLAYKSQPRK----KENLLTCLSDLFHSIATQKKKVGVIPPKKFITRLRKENELFDNYMQQDAHEFLNYLLNTIADIL------QEERKQEKQNGRIPNGNIDNENNNNTPDP--TWVHEIFQGTLTNETRCLTCETISSKDEDFLDLS 203
The following BLAST results are available for this feature:
BLAST of CX673770 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBP3_ARATH8.816e-8477.34Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP4_ARATH1.151e-8379.00Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabido... [more]
UBP12_SALSA2.263e-5556.00Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo ... [more]
UBP12_MOUSE2.263e-5557.00Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus mu... [more]
UBP46_PONAB5.041e-5557.00Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo ... [more]
UBP46_MOUSE5.041e-5557.00Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus mu... [more]
UBP46_HUMAN5.041e-5557.00Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo s... [more]
UBP12_DANRE5.041e-5557.00Ubiquitin carboxyl-terminal hydrolase 12 OS=Danio ... [more]
UB12A_XENLA8.599e-5556.50Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]
UB12B_XENLA1.123e-5456.50Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_24F12_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-24F12-L24-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX673770 ID=CX673770; Name=CX673770; organism=Citrus sinensis; type=EST; length=771bp
CTTCACTTGAATATAAAAGAAAATCACTAACCCTAACTGATTCAATTCAA
TTCAATTTTAATTCAATTTTCAATTGAAAACAGAAGAACAAACAATAAAC
ATATGGGAAGTGAATCGGCGTGGTGAGTTGAATCGGAGCGGGTGAAGAAG
ATCTAAAACTGAGTGGTGAGTAATGGGTGCTGCGGGTTCTAAACTCGAGA
AAGCTCTCGGCGACCAGTTCCCTGAAGGCGAGCGTTACTTCGGCCTCGAG
AATTTCGGCAACACTTGCTATTGCAACAGTGTTTTGCAGGCCCTTTATTT
TTGTGTTCCATTTCGTGAACAATTGCTAGACTATTACTCAAATAATAAGA
ACCTTGGGGATGCTGAAGAGAATCTCTTGACGTGCTTGGCAGACTTGTTT
ACACAGATAAGGGCTCAGAAGAAGAAAACAGGTGTCATTGCTCCAAAGCG
CTTTGTTCAGAGGTTGAAGAAACAAAATGAGCTTTTTCGCAGCTACATGC
ATCAGGATGCTCACGAATTCTTGAATTTCTTGCTAAACGAACTTGTTGAC
ATTCTGGAGAAAGAGGAAGCTGCAAAAAGTGATCCAGAAAGTTCATCGCC
ATCTGAGAAGACTGCAAATGGCCCAACAAATGGTCTGGCAAATGGTGTTC
GAAAAGAGCCATTGGTTACGTGGGTGCATAAAAATTTTCAGGGAATTCTT
ACCAATGAGACAAGGTGCTTGCGATGCGAGACAGTTACAGCCAGGGATGA
AACTTTTTTTGACTTGAGTCT
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