CV884839

Overview
NameCV884839
Unique NameCV884839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884839_ssr73 microsatellite CV884839_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13796 contig Csv1_Contig13796:659..1408. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 2.995e-65
Identity = 115/129 (89.15%), Postives = 122/129 (94.57%), Query Frame = -3
Query:  362 THCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 748
            THCVKLVHRLYPEVDP+LNPDHVPHMLHKCPD+IPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGL++VDHQLA DKRTRP VKKMAK Q YFFKEF+RAI +LSENNPLTG+KGEIRK CNLANK H
Sbjct:  202 THCVKLVHRLYPEVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQLAHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKNH 330          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER21_ARATH (Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.687e-39
Identity = 72/125 (57.60%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  371 HCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 745
            HCV LVHRLYP +DP L+P +  ++  +CP   PDP AV Y RNDR TPMV+DN YY+NI+ +KGL+++D +LATD RT P+V KMA   +YF ++FSR + LLSE NPLTG +GEIRK C   N
Sbjct:  203 HCVNLVHRLYPTIDPTLDPSYALYLKKRCPSPTPDPNAVLYSRNDRETPMVVDNMYYKNIMAHKGLLVIDDELATDPRTAPFVAKMAADNNYFHEQFSRGVRLLSETNPLTGDQGEIRKDCRYVN 327          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.385e-16
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = -3
Query:  371 HCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 745
            HC     RLYP  DP +N      +   CP A      V    ND  +P V DN YY ++++ +GL   D  L  DKRTR  V+  A  Q  FF  F+ A+  + + + LTGT+GEIR  C+  N
Sbjct:  219 HCPSFTDRLYPNQDPTMNQFFANSLKRTCPTANSSNTQV----NDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARN 339          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER63_ARATH (Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.480e-16
Identity = 46/126 (36.51%), Postives = 68/126 (53.97%), Query Frame = -3
Query:  371 THCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 748
            +HC +  +R+ P      NP     +   C ++  DP    +  ND  TP   DN Y++NI    GL+  DH L +D RTRP+V+  A+ Q  FF +F+ A+  LS +  LTG +GEIR+ C+  N
Sbjct:  205 SHCKEFTNRVNPNNSTGYNPRFAVALKKACSNSKNDPTISVF--NDVMTPNKFDNMYFQNIPKGLGLLESDHGLFSDPRTRPFVELYARDQSRFFNDFAGAMQKLSLHGVLTGRRGEIRRRCDAIN 328          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.361e-14
Identity = 46/130 (35.38%), Postives = 63/130 (48.46%), Query Frame = -3
Query:  371 HCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 745
            HC K+ +RLY       VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  203 HCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNI-DPRVA--INMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFTDSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER50_ARATH (Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.144e-14
Identity = 45/130 (34.62%), Postives = 65/130 (50.00%), Query Frame = -3
Query:  371 HCVKLVHRLYP-----EVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 745
            HC K+ +R+Y      +VDP +N D+V  +   CP  I DP+    +  D  TP   DN YY+N+   KGL   D  L TD+R++P V   A +   F + F  ++  L      TG+ G IR+ C   N
Sbjct:  203 HCTKVFNRIYTFNKTTKVDPTVNKDYVTELKASCPRNI-DPRVA--INMDPTTPRQFDNVYYKNLQQGKGLFTSDQVLFTDRRSKPTVDLWANNGQLFNQAFINSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.194e-13
Identity = 47/126 (37.30%), Postives = 67/126 (53.17%), Query Frame = -3
Query:  371 THCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 748
            +HC + V R+    +   NP     +   C +   DP    +  ND  TP   DN YY+N+    GL+  DH L +D RTR +V   AK+QD FFK+F++A+  LS     TG +GEIR+ C+  N
Sbjct:  194 SHCKEFVGRVGRN-NTGYNPRFAVALKKACANYPKDPTISVF--NDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDPRTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER45_ARATH (Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.560e-13
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = -3
Query:  371 HCVKLVHRLY-----PEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 745
            HC K+  R+Y       +DP++N  +V  +   CP  +    A+     D  +P   DN Y++N+   KGL   D  L TD+R+R  V   A S+  F + F  AIT L     LTG  GEIR+ C+  N
Sbjct:  199 HCGKMSKRIYNFSPTTRIDPSINRGYVVQLKQMCPIGVDVRIAINM---DPTSPRTFDNAYFKNLQQGKGLFTSDQILFTDQRSRSTVNSFANSEGAFRQAFITAITKLGRVGVLTGNAGEIRRDCSRVN 325          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER41_ARATH (Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.660e-13
Identity = 42/129 (32.56%), Postives = 68/129 (52.71%), Query Frame = -3
Query:  362 THCVKLVHRLYPEVDPALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLANKLH 748
            +HC +  +R++P+VDP LN      +   C +   +     ++  D  TP   DN Y++N+    GL+  DH L  D  TRP+V+  A +Q  FF++F+RA+  L          GE+R+ C+  NKL+
Sbjct:  199 SHCKEFSNRIFPKVDPELNAKFAGVLKDLCKNFETNKTMAAFL--DPVTPGKFDNMYFKNLKRGLGLLASDHILFKDPSTRPFVELYANNQTAFFEDFARAMEKLGRVGVKGEKDGEVRRRCDHFNKLN 325          
BLAST of CV884839 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.538e-13
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = -3
Query:  371 THCVKLVHRLYPEVDP----ALNPDHVPHMLHKCPDAIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLMMVDHQLATDKRTRPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEIRKVCNLAN 748
            +HC +   R++ + D      +NP +   +   C +   D +   +  ND  TP   DN YY+N+    GL+  DH +A D RTR  V   A+ +  FF  F++A+  +SE N  TG  GE+R+ C+  N
Sbjct:  195 SHCKEFASRIFNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAF--NDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
The following BLAST results are available for this feature:
BLAST of CV884839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PER42_ARATH2.995e-6589.15Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER21_ARATH3.687e-3957.60Peroxidase 21 OS=Arabidopsis thaliana GN=PER21 PE=... [more]
PER12_ARATH4.385e-1637.60Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER63_ARATH7.480e-1636.51Peroxidase 63 OS=Arabidopsis thaliana GN=PER63 PE=... [more]
PER51_ARATH5.361e-1435.38Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER50_ARATH9.144e-1434.62Peroxidase 50 OS=Arabidopsis thaliana GN=PER50 PE=... [more]
PER31_ARATH1.194e-1337.30Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER45_ARATH1.560e-1334.62Peroxidase 45 OS=Arabidopsis thaliana GN=PER45 PE=... [more]
PER41_ARATH2.660e-1332.56Peroxidase 41 OS=Arabidopsis thaliana GN=PER41 PE=... [more]
PER6_ARATH4.538e-1332.31Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884839 ID=CV884839; Name=CV884839; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTATTGCCAATGGCATGAATCATCAATTATCATCATTATACAAATC
CATGCACCATACACCATCCCTGCATACATACATACATCCCTCATCTACCA
CTGCCATTACTGAATATTAATAACATCAAGCTCACACCATCGAGGAAAAG
GAAAGCCTAGGCTTAAACATTGGACGGTACATCTAAGGAACATAATAGCA
GTAATACGAACATCTCACAGGAAACAAACCGATCTAGAAAAACCATCTTA
TTGGGAGCTCATCTCACACTCTTTTCTTCCTCATAGAAGAAACAAGGAAG
AAAAATTTGGAGCTATTAACTTGTTGTAGCTAATACAGCTGTTAGCTAGC
TAGGACTTGTCGTGGAGCTTGTTGGCAAGATTGCAAACCTTTCGGATCTC
ACCCTTTGTACCTGTGAGAGGGTTGTTCTCAGAAAGGAGAGTAATGGCTC
TTGAAAATTCCTTGAAGAAGTAGTCTTGACTCTTGGCCATCTTCTTAACA
TAAGGTCTTGTCCTCTTGTCGGTGGCTAGCTGATGATCAACCATCATCAA
GCCCTTGTTGTCCAATATGTTCCTATAGTAGTTGTTGTCCAGCACCATGG
GTGTGCCACGGTCATTCCTCACATACTGAACAGCCTTGGGGTCTGGGATT
GCATCAGGACACTTATGGAGCATATGCGGAACATGGTCAGGGTTCAGTGC
AGGGTCAACTTCTGGGTACAGACGGTGCACCAGCTTCACACAATGAGTTC
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