CV884813

Overview
NameCV884813
Unique NameCV884813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884813_ssr12 microsatellite CV884813_ssr12:12..37. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4344 contig Csv1_Contig4344:19..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 417.927 bits (1073), Expect = 3.899e-116
Identity = 211/236 (89.41%), Postives = 220/236 (93.22%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK++EGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV+DIE+MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG+RT GVLTKIDLMDKGTDA DILEG++YRLKFP
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDILEGRAYRLKFP 236          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 5.093e-116
Identity = 210/236 (88.98%), Postives = 220/236 (93.22%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK+EEGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQIS+VPIHLSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV+DIE+MVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTG+RT GVLTKIDLMDKGTDA DILEG++YRLKFP
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGDRTIGVLTKIDLMDKGTDAVDILEGRAYRLKFP 236          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 403.675 bits (1036), Expect = 7.610e-112
Identity = 202/236 (85.59%), Postives = 220/236 (93.22%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            MENLISLVNKIQRACTALGDHG++SALPTLWDSLPAIA            LESIVGKDFLPRGSGIVTRRPLVLQL K+++G+REYAEFLH+PRK+FTDFAAVRKEIQDETDRETGR+K ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV+DIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDP+G+RTFGVLTKIDLMDKGTDA +ILEG+S++LK+P
Sbjct:    1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYP 236          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 379.793 bits (974), Expect = 1.177e-104
Identity = 189/237 (79.75%), Postives = 217/237 (91.56%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRT-KQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            ME+LI+LVNKIQRACTALGDHGE S+LPTLWDSLPAIA            LES+VGKDFLPRG+GIVTRRPLVLQLH+++EG +EYAEF+H+P+K+FTDFAAVR+EI DETDRETGR+ K IS+VPIHLSI+SPNVVNLTL+DLPGLTKVAV+GQP+SIVQDIENMVRS+IEKPNCIILAISPANQDLATSDAIKISREVDP G+RTFGVLTKIDLMD+GT+A DILEG+ Y+L++P
Sbjct:    1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEG-KEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVRSFIEKPNCIILAISPANQDLATSDAIKISREVDPKGDRTFGVLTKIDLMDQGTNAVDILEGRGYKLRYP 236          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 2.539e-99
Identity = 177/236 (75.00%), Postives = 205/236 (86.86%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            M++LI L+NKIQRACT LGDHG      +LW++LP +A            LES+VG+DFLPRGSGIVTRRPLVLQLHK E+G+ EYAEFLH P+KRF DFAAVRKEI+DETDR TG++KQIS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQP+SIVQDIENMVRSY+EKPNCIILAISPANQD+ATSDAIK++REVDPTGERTFGV TK+D+MDKGTD  D+LEG+SYRL+ P
Sbjct:    4 MKSLIGLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVATKLDIMDKGTDCLDVLEGRSYRLQHP 237          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.377e-97
Identity = 173/239 (72.38%), Postives = 209/239 (87.45%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGE---ASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            ME+LI LVN+IQRACT LGD+G    ++A  +LW++LP +A            LESIVG+DFLPRGSGIVTRRPLVLQLHK ++G+ EYAEFLH+P+K+FTDFA VR+EIQDETDR TG+ KQIS VPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP++I +DIE+MVR+Y++KPNCIILAISPANQD+ATSDAIK++++VDPTGERTFGVLTK+DLMDKGT+A ++LEG+SYRL+ P
Sbjct:    4 MESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVRTYVDKPNCIILAISPANQDIATSDAIKLAKDVDPTGERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP 242          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 2.905e-95
Identity = 167/237 (70.46%), Postives = 208/237 (87.76%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLKFP 907
            ME+LI L+N IQRACT +GDHG +++AL +LW++LP++A            LESIVG+DFLPRGSGIVTRRPLVLQLHK E G+ + AEFLH+  K+FT+F+ VRKEI+DETDR TG+ KQISS+PIHLSI+SPNVVNLTLIDLPGLTKVAVEGQP++IV+DIE+MVRSY+EKPNC+ILAISPANQD+ATSDA+K+++EVDP G+RTFGVLTK+DLMDKGT+A D++ G+SY+LK+P
Sbjct:    1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVRSYVEKPNCLILAISPANQDIATSDAMKLAKEVDPIGDRTFGVLTKLDLMDKGTNALDVINGRSYKLKYP 237          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 2.399e-65
Identity = 132/234 (56.41%), Postives = 166/234 (70.94%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK 901
            M++LI++VNK+Q A T+LG H +          LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL     G  EY EFLHI  K+F+ F  +RKEI+DETDR TG  K IS++PI+L +YSP+V+NLTLIDLPGLTKVA+  QP  I Q I+ M+  +I K  C+ILA++PAN DLA SDA+K+++EVDP G RT GV+TK+DLMD+GTDA DILE K   L+
Sbjct:    1 MDSLITIVNKLQDAFTSLGVHMQLD--------LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLIN---GVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVITKLDLMDEGTDARDILENKLLPLR 223          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DYN1_RAT (Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.717e-64
Identity = 130/234 (55.56%), Postives = 163/234 (69.66%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK 901
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SPAN DLA SDA+KI++EVDP G+RT GV+TK+DLMD+GTDA D+LE K   L+
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLR 228          
BLAST of CV884813 vs. ExPASy Swiss-Prot
Match: DYN1_MOUSE (Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.717e-64
Identity = 130/234 (55.56%), Postives = 163/234 (69.66%), Query Frame = 2
Query:  200 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPTGERTFGVLTKIDLMDKGTDAADILEGKSYRLK 901
            ME+LI LVN++Q A +A+G + +          LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL      + EYAEFLH   K+FTDF  VR EI+ ETDR TG  K IS VPI+L +YSP+V+NLTL+DLPG+TKV V  QP  I   I +M+  ++ K NC+ILA+SPAN DLA SDA+KI++EVDP G+RT GV+TK+DLMD+GTDA D+LE K   L+
Sbjct:    6 MEDLIPLVNRLQDAFSAIGQNADLD--------LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLR 228          
The following BLAST results are available for this feature:
BLAST of CV884813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
SDLCA_SOYBN3.899e-11689.41Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN5.093e-11688.98Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1A_ARATH7.610e-11285.59Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH1.177e-10479.75Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.539e-9975.00Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH2.377e-9772.38Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH2.905e-9570.46Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DYN_DROME2.399e-6556.41Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN1_RAT7.717e-6455.56Dynamin-1 OS=Rattus norvegicus GN=Dnm1 PE=1 SV=2[more]
DYN1_MOUSE7.717e-6455.56Dynamin-1 OS=Mus musculus GN=Dnm1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884813 ID=CV884813; Name=CV884813; organism=Citrus sinensis; type=EST; length=907bp
CCTTATTTCAACTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTGTCCTACC
GGCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACGTCGCCGTTTCC
AGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCATC
TACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTGCGAGAGAAAA
TGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGGCT
CTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCTCT
TCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGTGT
TGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCGTT
ACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGCAG
AGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTTTG
CTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTCGT
ACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCTAA
TGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGCAG
TTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTCGC
TCCTACATTGAGAAGCCCAACTGTATAATTCTTGCAATTTCACCTGCAAA
TCAAGATCTTGCCACATCTGATGCAATCAAAATATCTCGTGAGGTAGATC
CTACAGGTGAGAGGACATTTGGGGTCTTGACAAAGATTGATCTTATGGAT
AAGGGAACTGATGCGGCTGATATATTGGAAGGAAAGTCTTATCGGCTAAA
ATTTCCT
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