CV884812

Overview
NameCV884812
Unique NameCV884812
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9208 contig Csv1_Contig9208:364..1115. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.299e-81
Identity = 148/163 (90.80%), Postives = 157/163 (96.32%), Query Frame = -3
Query:  262 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 750
            KQYP LR EVG AA++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNSIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  448 KQYPGLRVEVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.811e-79
Identity = 145/163 (88.96%), Postives = 156/163 (95.71%), Query Frame = -3
Query:  262 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 750
            KQYP LR EVG A+++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+SIPKSIVYCQVREAKRSLLDHFFTELGK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  448 KQYPGLRVEVGAASVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 291.582 bits (745), Expect = 3.108e-78
Identity = 143/163 (87.73%), Postives = 155/163 (95.09%), Query Frame = -3
Query:  262 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 750
            KQYPALR EV NAAIESL++MR+ SKKATLQLVDMECSYLTVDFFRKLPQDV+KGGNPTHSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLDHFF ELG ++ KRLS+LLNEDPA+MERRSA++KRLELYR+AQSEIDAVAWSK
Sbjct:  448 KQYPALRVEVTNAAIESLDKMREGSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.637e-69
Identity = 128/163 (78.53%), Postives = 146/163 (89.57%), Query Frame = -3
Query:  262 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 750
            KQYP LR EV  AA++SL+RMRD S+KATL LVDME  YLTV+FFRKLPQD +KGGNPTHSIFDRYND+YLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLD FFTELG+ E  +LS LL+EDPAV +RR+++AKRLELYRSAQ++I+AVAWSK
Sbjct:  448 KQYPTLRVEVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.033e-45
Identity = 90/165 (54.55%), Postives = 128/165 (77.58%), Query Frame = -3
Query:  268 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG-NPTHSIF---DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 750
            K++P L +++  AA E+LER RD S+K  L+LVDME SYLTV+FFRKL  + +K   NP ++     D Y+D++ R+IG+ V +Y+NMVC +LRNS+PK++VYCQVREAKRSLL+ F+ ++G+ E+++L  +L+EDP +MERR  LAKRLELY+ A+ +IDAVAW
Sbjct:  449 KRFPTLASDIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.834e-44
Identity = 86/169 (50.89%), Postives = 126/169 (74.56%), Query Frame = -3
Query:  268 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKG--------GNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 750
            K++P+L+ E+  AA  SLE+ R+ SKK+ ++LVDME +YLT +FFRKLPQ++++          +P+ +  D+Y D + RRI + V +YVNMV  +LRN+IPK+ VYCQVR+AK +LL++F++++ K E K+L  LL+EDPA+M+RR   AKRLELY+ A+ EIDAVAW
Sbjct:  454 KRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622          
BLAST of CV884812 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.843e-38
Identity = 81/163 (49.69%), Postives = 118/163 (72.39%), Query Frame = -3
Query:  268 KQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG--NPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTELGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 750
            K++P+L+ E+  AA  SL++ R+ S K+ L+LVDME SYLTVDFFRKL  +       +PT +I D+Y D + R+I + V +Y+ MV  +L N+IPK++V+CQVR+AK SLL++F+ ++ + + KRL  LL+E+PA+MERR   AKRLELY+ A+ EIDA  W
Sbjct:  449 KRFPSLQIELVAAANSSLDKFREESMKSVLRLVDMESSYLTVDFFRKLHVESQNMSLSSPTSAI-DQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVW 610          
The following BLAST results are available for this feature:
BLAST of CV884812 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SDL5A_SOYBN2.299e-8190.80Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN2.811e-7988.96Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH3.108e-7887.73Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.637e-6978.53Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.033e-4554.55Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH3.834e-4450.89Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH1.843e-3849.69Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884812 ID=CV884812; Name=CV884812; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTTTTTTTTTTGAAAGCCGAAAAATTCGTATATTATAGGCAACA
CATAAGAGTAGCATATGAAAACAACAGAACATTTAATAATATCACACAAT
AAAATATGCCTAATCACACCTTGACTACTAGTTAGGGTATAGAAATATAA
TGAAATATCCCGCCGCTTTCTCCCCTGCATGGCTAGTCATAATTGAAAGA
ATGACAGTCACCATCAAGCCAAAATTCGTGAGCTGAAATGGACTGGTAAA
ATGTTGAACTACTTTGACCAAGCAACTGCATCAATTTCTGATTGTGCACT
CCTGTATAACTCCAACCTTTTTGCAAGGGCAGATCGTCGCTCCATGACTG
CCGGATCTTCATTCAACAGGTTTGACAATCGTTTTTGCTCCAATTTACCC
AATTCAGTGAAGAAATGATCAAGTAGGCTTCGTTTGGCCTCACGAACTTG
ACAATAAACGATGGACTTAGGAATTGAGTTCCGCAGACTTGCACAGACCA
TATTGACATAAGACAAGACCGTGGTTCCAATTCTCCTTAGATACGAATCA
TTGTATCTGTCAAAAATTGAATGTGTAGGATTGCCACCCTTGTCAACATC
CTGAGGAAGCTTCCGGAAGAAATCAACTGTCAGATAACTGCACTCCATAT
CAACAAGCTGAAGTGTAGCTTTTTTGCTTGTGTCCCTCATTCTCTCAAGA
GACTCGATAGCTGCATTTCCAACTTCTGCTCGGAGAGCAGGATACTGCTT
TA
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