CV884811

Overview
NameCV884811
Unique NameCV884811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884811_ssr867 microsatellite CV884811_ssr867:867..876. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9735 contig Csv1_Contig9735:27..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884811 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 4.612e-56
Identity = 110/166 (66.27%), Postives = 130/166 (78.31%), Query Frame = -2 
Query:  312 RVKLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPLREEQYYEIREPFSIMSLVKSPXXXXXXXXXXXXXXMPKLMENMDPEEMRRAQEEMRSQGVPSLANLIPGA 809
            RV++P  ++    +   K SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKVQA LTETRR L ELVLEPLR EQYYE+REPFS+MS+VKSP              MPKLMEN+DPEEM+ AQE+MRSQGVPSL +L+P +
Sbjct:   39 RVRVPASTVIGHAA---KFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVPSLTSLLPAS 201
The following BLAST results are available for this feature:
BLAST of CV884811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH4.612e-5666.27UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884811 ID=CV884811; Name=CV884811; organism=Citrus sinensis; type=EST; length=924bp
GATGCAAGCTTGCCAACTGACATATTGGGACAAGGATAAAGTCTATTCTT
CAAGCAAGCAAAAATTATAATGACAAAATACAAAGTTGTTTGATTGTCAA
TATCACAACACAAAAAATAGCCAGTTTTTTTCACATTTAAAGAATTCCCT
GCATGTAGTCATTCAGAGAGCAAGATATTAAATCATCTTGTACAGGACCA
TTTCGATTGACATAGCACCCTGTTGTGCGATCTATCTACGGGGTTCTGGA
ATAAAGGGCACACTAGCCAATTTTGGGAAAGCACTATCAAGTCAATTGCC
TAGCTTCTTCCGGCTCCTGGTATCAAATTTGCTAGTGAGGGCACCCCTTG
GCTCCTCATCTCCTCTTGAGCACGTCTCATCTCCTCAGGATCCATATTTT
CCATTAATTTAGGCATAAGGAACACAACCACTAGCATAAATCCCATCATG
AGACCCATTGGGCTTTTCACAAGAGACATTATGGAAAAAGGTTCTCTAAT
CTCGTAATATTGCTCCTCTCTCAATGGCTCTAAAACCAATTCATTCAGAC
CCCTCCTGGTTTCCGTCAATGCTGCCTGAACCTTGCCTGGGTGTCTGGCA
CTAACATCAACCCGGACCGGAGAAAAGAAATAACCAATTGCAGCCACTTC
AATTAAATGAGTCCCTGCTGACATATTCTGGAATGAAAAATATCCATCAG
GCCTCAGAAATGTCACATGTTCGCCACCATTGAGTACAACTTTCACATTC
GATGCTTTTCCTCCAGGAGAGCCAAATGCTTTCAAACTCATACCGGGAAG
TTTGACACGGCCACTGATGCTGAAGCCATCACCAGACCCGCTCGAAACTG
CAACGGCCGAAGAGACGAGAGAGAGAAATAAATTTATGAAAAATACTGAG
AGAACCGATTTGGATCTGATTATG
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