EY665326

Overview
NameEY665326
Unique NameEY665326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1076
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665326 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.634e-16
Identity = 55/129 (42.64%), Postives = 72/129 (55.81%), Query Frame = 2
Query:   32 RNSGST-TRPQTSNMMTPFEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQ---------CGMQPRQASEEQEV--YMDVETQLSIGPPERR 382
            RN  S   R +TS +    E LE++KRKLLG+G++ C+I+ELQQLENQL+RSLSRIRA+K QL RE+                  +E+            Q   +S E  +   M+VET L IGPPE R
Sbjct:   82 RNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIASSQSTLSSSEVNIDDNMEVETGLFIGPPETR 210          
BLAST of EY665326 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 9.370e-14
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 2
Query:   32 RNSGST-TRPQTSNMMTPFEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCGMQPR-------QASEEQEV-----YMDVETQLSIGPPERR 382
            RN  S  ++ +T  +    E LE++ RK++G+GL+  +I+ELQQLENQL+RSL +IRA+K QL RE+                   E+C MQ R        +S   E+      M+V T L IGPPE R
Sbjct:   83 RNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIGRISSSSSTSELDIDDNEMEVVTDLFIGPPETR 212          
BLAST of EY665326 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.353e-12
Identity = 45/117 (38.46%), Postives = 60/117 (51.28%), Query Frame = 2
Query:   59 QTSNMMTPFEFLEVAKRKLLGDGLEPCTIDELQQLENQLERSLSRIRARKNQLFREQXXXXXXXXXXXXXXXXXXREQCGMQPRQ------------ASEEQEVYMDVETQLSIGPP 373
            + +NMM   E LE +KRKLLG+G+  C+I+ELQQ+E QLE+S+  IRARK Q+F+EQ                   E+ G    +              EE     +VETQL IG P
Sbjct:   93 EAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLP 209          
The following BLAST results are available for this feature:
BLAST of EY665326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AGL19_ARATH2.634e-1642.64Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL14_ARATH9.370e-1438.46Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH1.353e-1238.46MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665326 ID=EY665326; Name=EY665326; organism=Citrus sinensis; type=EST; length=1076bp
AATTTAAAGATGACGGGACGGCGGTACGGACCGGAATTCCGGGTCGACCA
CGCGTCCGCAGACTTCTAACATGATGACGCCTTTTGAGTTTCTTGAAGTG
GCCAAAAGAAAACTCCTTGGAGATGGACTGGAGCCATGTACAATTGATGA
GCTACAACAGTTAGAGAACCAGTTGGAACGAAGCTTAAGCAGAATTAGGG
CAAGAAAGAATCAGCTCTTCAGAGAACAAATTGAGAAGCTGAAAGAAAAG
GAAAAAATCCTCATTGAAGAAAATACGAAGCTGCGAGAGCAATGTGGGAT
GCAACCGCGGCAAGCGTCAGAGGAGCAAGAAGTATATATGGATGTAGAGA
CACAATTGTCCATAGGACCACCTGAAAGAAGAGTTGCTTAAAATCCTTTG
AATCATGACTGGGGATGTTGATATATATGCTATGCTGCTCAAAAGACACC
AAAAGTGACCAAGCTTTCCTCCACCCTTTTTTCTTTTCTTTTTGCTTAAT
CTTAATTGGGGTGATTTTAATTTTTCACCTTAATTTCATTAATATATTGG
GAAGGCCGAATAAGTTTCTGGAAAAACACCTTTTTATAGCATAAAACCAA
ACCATTACCAAGGAAGAAAACCGGTTTAAATTTCAGGGGGGGAATGGTAA
AAATATTTCCCAATGGACCATGTTAAGGGGGGGCCCTTTTCCGGCTTGGG
TTTGGGAAAAAAAGTTAAAAAAACTGGCTTTTTTTTTGCTTTTTACAAAA
AAAAAATAAAAAAAGGGGGGGGCCCCCCCCCTAAAGGGATCTCCAAAGCT
TTTACATACCCCGGGGGCGGGGGAAACCCCCGATAAACCTCTTTTTTAAA
GAGGGGCCAACCAAAAATTTAATATATCAGGGGGCCGCGCGGTTTTTTTA
AAAGCAGCGTAGGGGGAGGGGGGAAAAAAAACCCTGGGGGGGTTTTTTCC
CACACATTTTATAATCCCGCTCTGTTGGGGACCCACACCCACCCCCCCTC
TTTTTTCCCCCCCCCGGGGTGGGGGAGGATAAAAAAATAAAGAGAAGAAA
AAAAGAGAGAACCGCCGCCCCCCCCC
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