CV884807

Overview
NameCV884807
Unique NameCV884807
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884807_ssr19 microsatellite CV884807_ssr19:19..46. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6155 contig Csv1_Contig6155:34..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884807 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 5.200e-44
Identity = 94/172 (54.65%), Postives = 119/172 (69.19%), Query Frame = 2 
Query:  125 CTSQRLTNNKKPYDSCLDLPTLSSYLHYTYNATNSSLSIAFVSTPASPDG-WVAWAINPTAKGMAGSQALIALKSSGSL--VVKTYNIISYSNLTESKLSFQTWDLKAESGASGTTVIYGKLKVPEKAETLNQVWQVGAQVANGHPMKHEFKQANLQAKGPLNLVK--KPGS 625
            C SQ L N+  P+DSC DLP L+SYLHYTYN++NSSLS+AFV+TP+  +G WVAWAINPT   MAGSQA +A +S G    VVKTYNI SYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G  V NG P  H F   NL +   L+  +   PGS
Sbjct:   29 CKSQNL-NSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of CV884807 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH5.200e-4454.65Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884807 ID=CV884807; Name=CV884807; organism=Citrus sinensis; type=EST; length=907bp
CAAAGAAAAACATCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAAT
TGTTAACAATGGCGTTGGCCGTGGTACTCCTTTCCATCTCGGTCTTGCTA
ATCTCACCGGCTCATTCCCTCACCTGCACCTCGCAGAGACTCACCAACAA
CAAGAAGCCCTACGACAGTTGCCTCGATCTCCCCACTTTGAGCTCTTACC
TCCACTACACGTACAACGCCACGAACTCGTCTCTCTCCATCGCCTTCGTG
TCGACTCCGGCGTCGCCCGACGGCTGGGTCGCGTGGGCCATCAACCCGAC
GGCTAAGGGCATGGCCGGATCCCAGGCCCTCATCGCCCTCAAATCCAGCG
GCTCCCTCGTCGTCAAGACTTACAACATCATCTCCTACTCCAACCTCACC
GAATCAAAACTCTCGTTCCAAACCTGGGACTTGAAGGCCGAATCCGGTGC
CAGCGGGACCACCGTCATTTACGGTAAGCTCAAGGTTCCGGAGAAAGCGG
AGACGTTGAACCAAGTGTGGCAGGTGGGTGCTCAGGTGGCCAATGGACAT
CCCATGAAACATGAGTTTAAGCAGGCGAATCTTCAAGCCAAGGGGCCATT
GAATTTGGTCAAGAAGCCCGGTAGTTTGACGCCGGCGTCGGCGCCGACTC
CCGGTACCCCCGGTAGCCCCGGCGTTCCTTCTCCCGACAGGGGCGGACAG
TCGATGATCAGAGCTAATGTTGTTGGATTGTTTATGGGTTTGGTTCTGTT
TCTTGTAACAGTTTCCGCTTTGTAAACTTTCTGAGTTTTGTTTTTTATTA
TTTTTTTTAATTTTTAGTATTTTGCTGTAGTTATTATCCGCATTTTGTCC
ATTGGAGATCTCTGTGTTTTATTTTTTCGGCGAATAATTAATATATTTAT
GTTTTAC
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