CV884806

Overview
NameCV884806
Unique NameCV884806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884806_ssr862 microsatellite CV884806_ssr862:862..889. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6155 contig Csv1_Contig6155:14..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV884806 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 5.345e-44
Identity = 94/172 (54.65%), Postives = 119/172 (69.19%), Query Frame = -1 
Query:  283 CTSQRLTNNKKPYDSCLDLPTLSSYLHYTYNATNSSLSIAFVSTPASPDG-WVAWAINPTAKGMAGSQALIALKSSGSL--VVKTYNIISYSNLTESKLSFQTWDLKAESGASGTTVIYGKLKVPEKAETLNQVWQVGAQVANGHPMKHEFKQANLQAKGPLNLVK--KPGS 783
            C SQ L N+  P+DSC DLP L+SYLHYTYN++NSSLS+AFV+TP+  +G WVAWAINPT   MAGSQA +A +S G    VVKTYNI SYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G  V NG P  H F   NL +   L+  +   PGS
Sbjct:   29 CKSQNL-NSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of CV884806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH5.345e-4454.65Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010G02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884806 ID=CV884806; Name=CV884806; organism=Citrus sinensis; type=EST; length=927bp
GTAAAACATAAATATATTAATTATTCGCCGAAAAAATAAAACACAGAGAT
CTCCAATGGACAAAATGCGGATAATAACTACAGCAAAATACTAAAAATTA
AAAAAAATAATAAAAAACAAAACTCAGAAAGTTTACAAAGCGGAAACTGT
TACAAGAAACAGAACCAAACCCATAAACAATCCAACAACATTAGCTCTGA
TCATCGACTGTCCGCCCCTGTCGGGAGAAGGAACGCCGGGGCTACCGGGG
GTACCGGGAGTCGGCGCCGACGCCGGCGTCAAACTACCGGGCTTCTTGAC
CAAATTCAATGGCCCCTTGGCTTGAAGATTCGCCTGCTTAAACTCATGTT
TCATGGGATGTCCATTGGCCACCTGAGCACCCACCTGCCACACTTGGTTC
AACGTCTCCGCTTTCTCCGGAACCTTGAGCTTACCGTAAATGACGGTGGT
CCCGCTGGCACCGGATTCGGCCTTCAAGTCCCAGGTTTGGAACGAGAGTT
TTGATTCGGTGAGGTTGGAGTAGGAGATGATGTTGTAAGTCTTGACGACG
AGGGAGCCGCTGGATTTGAGGGCGATGAGGGCCTGGGATCCGGCCATGCC
CTTAGCCGTCGGGTTGATGGCCCACGCGACCCAGCCGTCGGGCGACGCCG
GAGTCGACACGAAGGCGATGGAGAGAGACGAGTTCGTGGCGTTGTACGTG
TAGTGGAGGTAAGAGCTCAAAGTGGGGAGATCGAGGCAACTGTCGTAGGG
CTTCTTGTTGTTGGTGAGTCTCTGCGAGGTGCAGGTGAGGGAATGAGCCG
GTGAGATTAGCAAGACCGAGATGGAAAGGAGTACCACGGCCAACGCCATT
GTTTACAATTTGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGAGATGTGT
TTTCTTTGGTGTGGGGCTGTGGGGGGG
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