CV884800

Overview
NameCV884800
Unique NameCV884800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig756 contig Csv1_Contig756:13..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884800 vs. ExPASy Swiss-Prot
Match: Y4844_ARATH (Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.568e-43
Identity = 88/132 (66.67%), Postives = 105/132 (79.55%), Query Frame = 2
Query:   98 RKPVFTKVDQLRPGTSGHTLTVKVVSTKMVL---QKGRGDGTQVRQM---RIAECLVGDETGMIIFTARNDQVDLMKEGTTVILRNAKIDMFKGSMRLAVDKWGRVEVAEPANFTVKEDNNLSLIEYELVNV 475
            RKPVF KV+QL+PGT+GHTLTVKV+   +V+   +K R   +  R     RI ECL+GDETG I+FTARNDQVDLMK G TVILRN++IDMFKG+MRL VDKWGR+E    A+FTVKEDNNLSL+EYEL+NV
Sbjct:   18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDNNLSLVEYELINV 149          
The following BLAST results are available for this feature:
BLAST of CV884800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4844_ARATH6.568e-4366.67Uncharacterized protein At4g28440 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884800 ID=CV884800; Name=CV884800; organism=Citrus sinensis; type=EST; length=833bp
CTTGACTCTTTCTCCTCCTTCAATTCCCAAAATCATTTCGTGTCTCAACT
CAGGTTTTGTAGCTTTGCTGGAAATGGCAGAATCAAAATCAGGATTGAGG
AAACCAGTTTTTACCAAGGTTGATCAGCTACGCCCAGGTACTAGTGGGCA
CACTCTCACAGTGAAGGTTGTGAGTACGAAGATGGTATTGCAGAAGGGTC
GTGGTGATGGAACACAAGTACGTCAGATGCGAATTGCTGAATGCTTGGTT
GGTGATGAGACAGGAATGATTATCTTTACTGCTAGAAATGATCAAGTGGA
CCTGATGAAAGAGGGTACTACTGTGATTCTGCGCAATGCAAAAATTGACA
TGTTTAAAGGATCAATGAGACTTGCTGTGGACAAGTGGGGCCGTGTTGAA
GTTGCAGAGCCTGCCAATTTCACCGTGAAGGAAGATAACAACCTCTCTCT
GATTGAATATGAGCTTGTGAATGTTGTAGAAGAGTGAATTTCTGGACAGT
GTTCACTTACTCACTGCAATGTGACCCAAGAATAAAAAGAAATCCAGCAT
ATCATAGTACTGTCGTTTATGCGGCATCTCCTGCCCAAAACTGTGTTGCC
TTTAGGAAGAAGAAATCTGGAAGCTATTACTACCCAAGATGCTTTCTACC
GTTGTGGCAGATCCAGTAGAACCTTTTGATTGGACCTCCAAACAGATGGT
GATGGCTCTAAAGTTGATAAGTTAAAGCAGCTGGCATTTAGAACTGTCTT
TGGTTTGTTTGCGACCTATTTATTTTTGGAACTCAACTGTTCTTTGGCTA
TTAGATTATACTTGGAATATTAATATCGTGAAA
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