CV884797

Overview
NameCV884797
Unique NameCV884797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884797_ssr78 microsatellite CV884797_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:187..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 456.062 bits (1172), Expect = 1.250e-127
Identity = 216/251 (86.06%), Postives = 235/251 (93.63%), Query Frame = -2
Query:  136 RKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 888
            +K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:   39 KKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 442.965 bits (1138), Expect = 1.095e-123
Identity = 213/251 (84.86%), Postives = 232/251 (92.43%), Query Frame = -2
Query:  136 RKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 888
            +K +PKK+K  +  SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN  G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA  TGKGPLNNWATHLSDPLHTTI+DTF S
Sbjct:   38 KKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 7.382e-104
Identity = 182/231 (78.79%), Postives = 203/231 (87.88%), Query Frame = -2
Query:  184 PKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 876
            PKKS+Q     DR +W+PGA  PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG   E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK  TL+LAEIKH+RLAMVAFL FA+QA  TGKGP++  AT
Sbjct:   44 PKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 248.825 bits (634), Expect = 3.032e-65
Identity = 136/242 (56.20%), Postives = 163/242 (67.36%), Query Frame = -2
Query:  187 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 888
            +K A     +S G   R      LW P    PEWLDGSL GD GFDP GL KP+E++    D  DQN AKN  G +        D  S+   L PY+EVFGL RFRECELIHGRWAMLA LGAL  E  TG++W +AGKVEL +G+SY G  LPFSIT LIWIEV+++G  EF RNSE +PEKR YPGG  FDPL LA++ E++A  L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A
Sbjct:   29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35
Identity = 94/235 (40.00%), Postives = 124/235 (52.77%), Query Frame = -2
Query:  139 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 831
            W PG   P +LDGS  GD+GFD  GLG+                   PA                          L+R++E ELIH RWAMLA  G +  E L    W  A +   + G  ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K   L++ EIK+ RLA++A +GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:   49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.577e-35
Identity = 95/235 (40.43%), Postives = 119/235 (50.64%), Query Frame = -2
Query:  139 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 831
            W+PG   P  LDGS  GD+GFDP GL    E                                             +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG F DPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:   48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 6.817e-33
Identity = 99/271 (36.53%), Postives = 135/271 (49.82%), Query Frame = -2
Query:  151 RKTAPKKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 888
            +K AP KSK  S +SD    WY               ++ PE+L+G + GDYG+DPFGLGK  E           N AK                                ++  ELIH RWAML   G +  E L            W   G + L++G++  Y G+ +P ++   +  EV+++G  E+ R  + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP    +L
Sbjct:   42 KKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.425e-30
Identity = 89/258 (34.50%), Postives = 120/258 (46.51%), Query Frame = -2
Query:  142 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 843
            DRPLW+PG+  PEWLDGSL GD+GFDP GLG   E L+++                                            + EL+H RWAML   G    E+LT I      +W  AG+ E    +           TTL  IE+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:   64 DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.269e-28
Identity = 86/258 (33.33%), Postives = 118/258 (45.74%), Query Frame = -2
Query:  142 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 843
            DRPLW+PG+  P WLDGSL GD+GFDP GL    E L+++                                           ++ EL+H RWAML   G    E LT I      +W  AG+ E    +           TTL  +E+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:   64 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------------------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27
Identity = 94/265 (35.47%), Postives = 117/265 (44.15%), Query Frame = -2
Query:  199 APKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 879
            APKKS           W P  K       PEWLDGSL GD+GFDP GLGK   +L++                                           +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEIKHARLAM+A L F  +A   GK PL
Sbjct:   55 APKKS-----------WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
The following BLAST results are available for this feature:
BLAST of CV884797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB4A_ARATH1.250e-12786.06Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.095e-12384.86Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH7.382e-10478.79Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.032e-6556.20Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB11_SOLLC1.468e-3540.00Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU5.577e-3540.43Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB26_ARATH6.817e-3336.53Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_PETHY2.425e-3034.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.269e-2833.33Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4_SPIOL7.300e-2735.47Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884797 ID=CV884797; Name=CV884797; organism=Citrus sinensis; type=EST; length=889bp
CTTTTGATTTAATATGAAGCCTAGCATTCCCCTTAAGCTGTCAAACGTTA
TAAATTCTTTTTACAAGATAGGCGCATATAATAATAATAACAATAGTGCC
AACTGCCAAGTACTGGAGGCTACACCAGAAATCTAAGAGATGAAGGTGTC
AAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCCCAGTTGTTGA
GAGGGCCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCCAAGGAATGCA
ACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAAGGGTGGCTTT
CTTTTCCGGGTCAGCGGCCAAGCCCAGAGGATCAAAAAACTTTCCTCCCG
GGTAGAGTCTCTTCTCTGGGTCAAGCTCTGAGTTTCTTTGGAACTCAATG
TAGCCAATTACCAAAACCTCAATCCATATCAACGTTGTTATTGAGAATGG
AAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCTACCTTGCCAG
CGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAGGGCACCGAGA
GTAGCCAACATGGCCCAGCGTCCATGAATGAGCTCACACTCACGGAACCT
CTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTGGACTGCATGT
CAGAGGCCTCAATCCTCGTCCCAATAATATCACCAGCCGGGTTCTTAGCC
AAGTTCTGGTCCAACGAGTCATAGTCATACTGCAAGTACTCCGCCGGCTT
GCCCAGCCCGAACGGGTCGAACCCGTAGTCACCCACCAAGCTCCCGTCGA
GCCACTCGGGTGCCTTGGCTCCTGGGTACCAAAGTGGACGATCAGAGGAT
CCGGAAGACTGTTTCGACTTTTTGGGTGCTGTTTTTCTC
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