CV884797
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 456.062 bits (1172), Expect = 1.250e-127 Identity = 216/251 (86.06%), Postives = 235/251 (93.63%), Query Frame = -2 Query: 136 RKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 888 +K APKKS + + ++DRPLWYPGA +P+WLDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN AGD+IGTR EA+D +STP QPY+EVFG+QRFRECELIHGRWAMLATLGAL+VEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLAADPEK A LQLAEIKHARLAMVAFLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 39 KKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 289
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 442.965 bits (1138), Expect = 1.095e-123 Identity = 213/251 (84.86%), Postives = 232/251 (92.43%), Query Frame = -2 Query: 136 RKTAPKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS 888 +K +PKK+K + SDRPLW+PGAK+PE+LDGSLVGDYGFDPFGLGKPAEYLQ+D DSLDQNLAKN G++IGTR EA D +STP QPY+EVFGLQRFRECELIHGRWAMLATLGA+TVEWLTG+TWQDAGKVELV+GSSYLGQPLPFSI+TLIWIEVLVIGYIEFQRN+ELD EKRLYPGGKFFDPLGLA+DP KKA LQLAEIKHARLAMV FLGFAVQA TGKGPLNNWATHLSDPLHTTI+DTF S Sbjct: 38 KKASPKKAK--TVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSS 286
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 7.382e-104 Identity = 182/231 (78.79%), Postives = 203/231 (87.88%), Query Frame = -2 Query: 184 PKKSKQSSGSSDRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWAT 876 PKKS+Q DR +W+PGA PEWLDGS++GD GFDPFGLGKPAEYLQYD+D LDQNLAKN AGDIIG E+S+++ TP QPYTEVFG+QRFRECELIHGRWAML TLGA+ VE LTGI WQDAGKVELVEGSSYLGQPLPFS+TTLIWIEVLV+GYIEFQRNSELDPEKR+YPGG +FDPLGLAADPEK TL+LAEIKH+RLAMVAFL FA+QA TGKGP++ AT Sbjct: 44 PKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGG-YFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLAT 273
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 248.825 bits (634), Expect = 3.032e-65 Identity = 136/242 (56.20%), Postives = 163/242 (67.36%), Query Frame = -2 Query: 187 RKTAPKKSKQSSGSSDRP-----LWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTP--LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKA-TLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWA 888 +K A +S G R LW P PEWLDGSL GD GFDP GL KP+E++ D DQN AKN G + D S+ L PY+EVFGL RFRECELIHGRWAMLA LGAL E TG++W +AGKVEL +G+SY G LPFSIT LIWIEV+++G EF RNSE +PEKR YPGG FDPL LA++ E++A L+ AEIKHARLAMV+F G+ VQA+ TG+G L + A Sbjct: 29 KKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 268
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 1.468e-35 Identity = 94/235 (40.00%), Postives = 124/235 (52.77%), Query Frame = -2 Query: 139 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEG--SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 831 W PG P +LDGS GD+GFD GLG+ PA L+R++E ELIH RWAMLA G + E L W A + + G ++YLGQP+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K L++ EIK+ RLA++A +GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 49 WMPGQPRPSYLDGSAPGDFGFDSLGLGEV------------------PAN-------------------------LERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAF-DPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVII 239
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.577e-35 Identity = 95/235 (40.43%), Postives = 119/235 (50.64%), Query Frame = -2 Query: 139 WYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 831 W+PG P LDGS GD+GFDP GL E +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG F DPLG + DP K L+L EIK+ RLAM+AF+GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 48 WFPGQPRPAHLDGSSPGDFGFDPLGLATVPE-------------------------------------------NFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF-DPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 6.817e-33 Identity = 99/271 (36.53%), Postives = 135/271 (49.82%), Query Frame = -2 Query: 151 RKTAPKKSKQSSGSSDR-PLWY-------------PGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI--------TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQR-NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 888 +K AP KSK S +SD WY ++ PE+L+G + GDYG+DPFGLGK E N AK ++ ELIH RWAML G + E L W G + L++G++ Y G+ +P ++ + EV+++G E+ R + LD E +L+PGG F DPLGLA DPE+ A L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP +L Sbjct: 42 KKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-----------NFAK--------------------------------YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPF-DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 2.425e-30 Identity = 89/258 (34.50%), Postives = 120/258 (46.51%), Query Frame = -2 Query: 142 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 843 DRPLW+PG+ PEWLDGSL GD+GFDP GLG E L+++ + EL+H RWAML G E+LT I +W AG+ E + TTL IE+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 64 DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWN-------------------------------------------AQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 2.269e-28 Identity = 86/258 (33.33%), Postives = 118/258 (45.74%), Query Frame = -2 Query: 142 DRPLWYPGAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 843 DRPLW+PG+ P WLDGSL GD+GFDP GL E L+++ ++ EL+H RWAML G E LT I +W AG+ E + TTL +E+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 64 DRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWN-------------------------------------------QQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CV884797 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 7.300e-27 Identity = 94/265 (35.47%), Postives = 117/265 (44.15%), Query Frame = -2 Query: 199 APKKSKQSSGSSDRPLWYPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNPAGDIIGTRIEASDMQSTPLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 879 APKKS W P K PEWLDGSL GD+GFDP GLGK +L++ +RE ELIHGRWAMLA LG + TGI W +AG + G PFS TL+ ++L++G++E +R + DP+ + YPGGKFFDPL LA D +K L+LAEIKHARLAM+A L F +A GK PL Sbjct: 55 APKKS-----------WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKW-------------------------------------------YREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256 The following BLAST results are available for this feature:
BLAST of CV884797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884797 ID=CV884797; Name=CV884797; organism=Citrus sinensis; type=EST; length=889bpback to top |