CV884773

Overview
NameCV884773
Unique NameCV884773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884773_ssr657 microsatellite CV884773_ssr657:657..668. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL1_ARATH (Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 1.209e-47
Identity = 96/181 (53.04%), Postives = 121/181 (66.85%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRSSLVYRPVMLSMXXXXXXXXXXXLLFKSSPEVLYIFRPFRWELL 567
            P+  GPAGLTPLH+AA +D +E+VLDALT+DP  VGIEAWK+ +DSTG TP DYA LR H SYIHL+QRKINKKS+    V+++IP S  D + K+ P  G  +S +          ++ Q  C+LC+ K+ Y   R S+ YRP MLSM           LLFKS PEVLY+F+PFRWELL
Sbjct:  707 PDAAGPAGLTPLHIAAGKDGSEDVLDALTEDPAMVGIEAWKTCRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTTEDHVVVNIPVSFSDREQKE-PKSGPMASAL----------EITQIPCKLCDHKLVYGTTRRSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELL 876          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL12_ARATH (Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.883e-41
Identity = 91/183 (49.73%), Postives = 119/183 (65.03%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQK-VAYRNMRSSLVYRPVMLSMXXXXXXXXXXXLLFKSSPEVLYIFRPFRWELLK 570
            P+  GP GLTPLH+AA +D +E+VLDALT+DPG  GI+AWK+++D+TG TP DYA LR H SYIHLVQRK+++K      V+++IP S  + + KQ+      SS   SL+  +I       QC+LC+ K V       S+ YRP MLSM           LLFKS PEVLY+F+PFRWELL+
Sbjct:  751 PDAAGPGGLTPLHIAAGKDGSEDVLDALTEDPGMTGIQAWKNSRDNTGFTPEDYARLRGHFSYIHLVQRKLSRKPIAKEHVVVNIPESF-NIEHKQEKRSPMDSS---SLEITQI------NQCKLCDHKRVFVTTHHKSVAYRPAMLSMVAIAAVCVCVALLFKSCPEVLYVFQPFRWELLE 923          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL1_ORYSJ (Squamosa promoter-binding-like protein 1 OS=Oryza sativa subsp. japonica GN=SPL1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.095e-27
Identity = 71/186 (38.17%), Postives = 105/186 (56.45%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEK---ITTKVMQQQCRLCEQKVAYR-NMRSSLVYRPVMLSMXXXXXXXXXXXLLFKSSPEVLYIFRPFRWELLK 570
            P++ GP+ +TPLH+AA   D   VLDALTDDP  +GI+AWK+A+D+TGLTP DYA  R H SYI +VQ KI+ +  ++  V + I  +    D  +K    +K++   +   EK   I+TK     CR C  ++AYR ++   L  RP +LS+           L+ +  P +  +  PFRW  L+
Sbjct:  675 PDIAGPSDITPLHIAATYSDTAGVLDALTDDPQQLGIKAWKNARDATGLTPEDYARKRGHESYIEMVQNKIDSRLPKA-HVSVTISSTTSTTDFTEKHASQSKTTDQTAFDVEKGQQISTK-PPLSCRQCLPELAYRHHLNRFLSTRPAVLSLVAIAAVCVCVGLIMQGPPHIGGMRGPFRWNSLR 858          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.837e-26
Identity = 71/184 (38.59%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLC-EQKVAYRNMRS-SLVYRPVMLSMXXXXXXXXXXXLLFKSSPEVLYIFRPFRWELLK 570
            P+  GP+  TPLH+AA  DDAE+VLDALT+DPG VGI  W++A+D  G TP DYA  R + +Y+++V++KINK   + G V+L +P SI         +        +SL+   +T       C  C  Q + Y N  + + +YRP ML++           LL  + P+V Y    FRWELL+
Sbjct:  791 PDAQGPSKFTPLHIAAATDDAEDVLDALTNDPGLVGINTWRNARDGAGFTPEDYARQRGNDAYLNMVEKKINKHLGK-GHVVLGVPSSI------HPVITDGVKPGEVSLEI-GMTVPPPAPSCNACSRQALMYPNSTARTFLYRPAMLTVMGIAVICVCVGLLLHTCPKV-YAAPTFRWELLE 965          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL14_ARATH (Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.179e-18
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWD--SKQKPLKGNKSS 339
            PN+ GP G+TPLH+AAC   +++++D LT+DP  +G+ +W + +D+TG TP  YA++R +H+Y  LV RK+  K ++  +V L+I   +VD    SK+  L+ NKSS
Sbjct:  863 PNITGPGGITPLHLAACTSGSDDMIDLLTNDPQEIGLSSWNTLRDATGQTPYSYAAIRNNHNYNSLVARKLADKRNK--QVSLNIEHEVVDQTGLSKRLSLEMNKSS 967          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSJ (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. japonica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRS-SLVYRPVMLSM 471
            PNV GP GLTPLH+AA  +DA +++DALTDDP  +G+  W SA D  G +P  YA LR +++Y  LV +K+  +  ++ +V + +    +  D      + NKS+ + +LQ           QC + +  +  R M S  L+ RP + SM
Sbjct:  964 PNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDR--KNNQVTIMVGKEEIHMDQSGNVGEKNKSA-IQALQIRSC------NQCAILDAGLLRRPMHSRGLLARPYIHSM 1104          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL15_ORYSI (Squamosa promoter-binding-like protein 15 OS=Oryza sativa subsp. indica GN=SPL15 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 54/150 (36.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSIVDWDSKQKPLKGNKSSRVLSLQTEKITTKVMQQQCRLCEQKVAYRNMRS-SLVYRPVMLSM 471
            PNV GP GLTPLH+AA  +DA +++DALTDDP  +G+  W SA D  G +P  YA LR +++Y  LV +K+  +  ++ +V + +    +  D      + NKS+ + +LQ           QC + +  +  R M S  L+ RP + SM
Sbjct:  964 PNVAGPGGLTPLHLAASIEDAVDIVDALTDDPQQIGLSCWHSALDDDGQSPETYAKLRNNNAYNELVAQKLVDR--KNNQVTIMVGKEEIHMDQSGNVGEKNKSA-IQALQIRSC------NQCAILDAGLLRRPMHSRGLLARPYIHSM 1104          
BLAST of CV884773 vs. ExPASy Swiss-Prot
Match: SPL16_ARATH (Squamosa promoter-binding-like protein 16 OS=Arabidopsis thaliana GN=SPL16 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   25 PNVIGPAGLTPLHVAACRDDAENVLDALTDDPGSVGIEAWKSAQDSTGLTPNDYASLRAHHSYIHLVQRKINKKSSESGRVILDIPGSI 291
            P++ GP  +TPLH+AA    +++++DALT+DP  +G+  W +  D+TG TP  YA++R +HSY  LV RK+  K   +G++ L+I   I
Sbjct:  820 PSIAGPGDITPLHLAASTSSSDDMIDALTNDPQEIGLSCWNTLVDATGQTPFSYAAMRDNHSYNTLVARKLADK--RNGQISLNIENGI 906          
The following BLAST results are available for this feature:
BLAST of CV884773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SPL1_ARATH1.209e-4753.04Squamosa promoter-binding-like protein 1 OS=Arabid... [more]
SPL12_ARATH2.883e-4149.73Squamosa promoter-binding-like protein 12 OS=Arabi... [more]
SPL1_ORYSJ3.095e-2738.17Squamosa promoter-binding-like protein 1 OS=Oryza ... [more]
SPL6_ORYSJ5.837e-2638.59Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]
SPL14_ARATH1.179e-1842.99Squamosa promoter-binding-like protein 14 OS=Arabi... [more]
SPL15_ORYSJ1.441e-1636.00Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL15_ORYSI1.441e-1636.00Squamosa promoter-binding-like protein 15 OS=Oryza... [more]
SPL16_ARATH7.907e-1541.57Squamosa promoter-binding-like protein 16 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010E05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884773 ID=CV884773; Name=CV884773; organism=Citrus sinensis; type=EST; length=860bp
GGCTGGCAGCGGCTTTATATTTAACCCAATGTTATTGGGCCGGCTGGATT
GACTCCACTTCATGTTGCAGCATGTAGGGATGATGCAGAGAATGTGTTGG
ATGCCTTAACTGATGATCCTGGATCGGTGGGGATAGAAGCTTGGAAGAGT
GCCCAAGACAGCACAGGTTTGACCCCAAATGATTATGCGAGCCTGCGAGC
CCACCACTCATATATCCATCTAGTGCAAAGGAAAATCAACAAGAAATCAT
CAGAAAGTGGGCGTGTGATCCTAGATATACCCGGTAGCATTGTTGACTGG
GATTCCAAGCAGAAACCGTTGAAGGGGAATAAATCATCTCGAGTTCTCAG
CTTGCAGACTGAAAAGATCACGACCAAAGTGATGCAGCAGCAATGCAGGT
TATGTGAACAGAAGGTGGCTTATAGAAACATGAGATCATCACTGGTATAC
AGGCCTGTAATGCTCTCAATGGTGGCCATTGCAGCTGTCTGTGTTTGCGT
GGCACTGCTCTTCAAAAGCTCACCAGAAGTTCTTTATATTTTCCGGCCAT
TCAGGTGGGAATTGCTCAAGTATGGGTCTAGTTAAGGTAGTTATTATACT
TATTAGTTCCCGCAGGCAGCATGCTGGACTTTTTTCTCTTGCCCTCTTTT
TTTGTTTCCTCCTCCTCCATATGAAGCGCTAGAAGTCCTGCTTATTTGTA
TGGATTTAGAAATTCAGAGGAAAAATAAGTACTGTATATGTGTTAAGGAT
AGCTCATTTCAATTATATATACAATGAAAGTTGGATTGATATCAAAGATG
AAAGATATTTATTAGTGTCCAACGCCAGTGTCAAGAGTATAAATATTAAA
TTAATTATAA
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