CV884733

Overview
NameCV884733
Unique NameCV884733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884733_ssr419 microsatellite CV884733_ssr419:419..452. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3453 contig Csv1_Contig3453:546..1346. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP6_ARATH (Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.852e-29
Identity = 54/81 (66.67%), Postives = 72/81 (88.89%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            TAV+AM+FPFFN  +GL+GA +FWPLTVYFP+EM+I++ KI KFS TW WL++LSWTCFIV+L+AAAGS+QGL++ L+ +K
Sbjct:  396 TAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQSLKDFK 476          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP1_ARATH (Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.282e-24
Identity = 48/81 (59.26%), Postives = 68/81 (83.95%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T V+AM+FPFFN+++GL+GA +FWPLTVYFPVEM+I++ KI+K+S  W+ L+ + + C IV+LLAAAGSI GL+  ++TYK
Sbjct:  398 TTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAGLISSVKTYK 478          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP3_ARATH (Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.852e-23
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T VI+ML PFFN V+GLLGA+ FWPLTVYFPVEMYI++ KI ++S  W+ LQV S  C +V++ AAAGSI G++ DL++YK
Sbjct:  390 TTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGVLLDLKSYK 470          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP5_ARATH (Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.125e-23
Identity = 49/81 (60.49%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T +I+ML PFFN V+GLLGAI FWPLTVYFPVEMYI++  + ++   W+ LQVLS TC  V++ AAAGS+ G+V DL+ YK
Sbjct:  394 TTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAAAAGSVIGIVSDLKVYK 474          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP4_ARATH (Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.037e-23
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T VI+ML PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ ++S+ W+ LQ+LS  C ++TL+A  GSI G++ DL+ YK
Sbjct:  380 TTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAGVMLDLKVYK 460          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP2_ARATH (Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.190e-23
Identity = 46/81 (56.79%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T VI+ML PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ K+S  W+ LQ+LS  C +++++A  GSI G++ DL+ YK
Sbjct:  407 TTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAGVMLDLKVYK 487          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP8_ARATH (Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 46/81 (56.79%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  558 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK 800
            T  +AM+FPFFN+++GLLGA AFWPLTVYFPV M+I++AK++K+S  W+ L +L   C IV+ LAA GSI GL+  +++YK
Sbjct:  389 TTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINSVKSYK 469          
BLAST of CV884733 vs. ExPASy Swiss-Prot
Match: AAP7_ARATH (Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.842e-17
Identity = 39/74 (52.70%), Postives = 55/74 (74.32%), Query Frame = -2
Query:  579 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLV 800
            T  +A++FP+FN V+G++GA+AFWPL VYFPVEM I + KIR ++  W+ L+  S+ C +V LL+  GSI GLV
Sbjct:  389 TTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462          
The following BLAST results are available for this feature:
BLAST of CV884733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
AAP6_ARATH3.852e-2966.67Amino acid permease 6 OS=Arabidopsis thaliana GN=A... [more]
AAP1_ARATH1.282e-2459.26Amino acid permease 1 OS=Arabidopsis thaliana GN=A... [more]
AAP3_ARATH1.852e-2361.73Amino acid permease 3 OS=Arabidopsis thaliana GN=A... [more]
AAP5_ARATH4.125e-2360.49Amino acid permease 5 OS=Arabidopsis thaliana GN=A... [more]
AAP4_ARATH7.037e-2358.02Amino acid permease 4 OS=Arabidopsis thaliana GN=A... [more]
AAP2_ARATH9.190e-2356.79Amino acid permease 2 OS=Arabidopsis thaliana GN=A... [more]
AAP8_ARATH4.561e-2256.79Amino acid permease 8 OS=Arabidopsis thaliana GN=A... [more]
AAP7_ARATH9.842e-1752.70Probable amino acid permease 7 OS=Arabidopsis thal... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884733 ID=CV884733; Name=CV884733; organism=Citrus sinensis; type=EST; length=801bp
TTTTGAACCATGGATAAATATCACATCCTTGTAATTGGTATGCGATCACA
GGTTCTTAAATAATGACCATTATTTAGTGACCATTAAAAATTAAAATAAT
TAAATAGTATTACATCAAAGAACATAAAACTTACAGGATCCTTATTGCTC
TCATGCGTTGGGACTACAATATCCACCTCAGAAGATAATGGTGTTTGTAC
ATTTGAATCCTAGGTAGGTGAAAAAGGTCCAAAATCGTCAAGCACACCGT
CAACGGCGACGTGATCGGTGATGGGCTGGTCGGCGATGGGCGTGGCGTGA
CAGCGATGATGGCTGGTCAACAATGGCCGCGGCGTGACAACAAGTTTCGT
GGGTGAGTGACAGCCTGCTAGTGGGTGAGTGAGAGAGGCAGATCGGGTGA
GTGAGAGGGAAGGTGACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGTGACTAGAACCATTGCATAAAATGTTTGCTTTGATCATTTTCTTTAG
AAAAAGGGAAAATGAAGCAATAGAAGGCGAGTAAGACTAAGAAGCTGAGC
TAAAAGGTTTGTACGTCTGGAGATCCTTAACGAGGCCTTGAATGGAACCA
GCAGCAGCAAGAAGCGTTACGATAAAGCAAGTCCAACTCAGAACTTGTAA
CCACATCCAGGTGACCGAAAACTTGCGAATCTTTGCCCGTGAAATGTACA
TCTCTACCGGAAAATAAACTGTCAATGGCCAGAATGCGATAGCTCCAAGC
AGGCCTATAACACTGTTGAAAAATGGAAATAACATCGCTATCACAGCCGT
T
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