CX043321

Overview
NameCX043321
Unique NameCX043321
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043321_ssr163 microsatellite CX043321_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13169 contig Csv1_Contig13169:11..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR4_MOUSE (Cationic amino acid transporter 4 OS=Mus musculus GN=Slc7a4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.638e-21
Identity = 57/140 (40.71%), Postives = 83/140 (59.29%), Query Frame = 2
Query:  113 CFSHFWSSALRAKTLTAPSVRTNDXXXXXXXXXXXXXXXIGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 529
            C + F     R K L   S+ T+                +GVG  VG+G++V+TGTVA+D AGP V +SFL+A  AS+L ALCYAE  +R P   G AYL+ Y +  E+ AFL+   ++L+Y IG A++AR+ + Y+ +I
Sbjct:   10 CLARFCQKLNRLKPLEESSMETS----LRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVAAVASLLAALCYAEFGARVPRT-GSAYLFTYVSMGEIWAFLIGWNVLLEYLIGGAAVARAWSGYLDAI 144          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR4_HUMAN (Cationic amino acid transporter 4 OS=Homo sapiens GN=SLC7A4 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 53/124 (42.74%), Postives = 81/124 (65.32%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL--ELFPFFKENIPSW----IGH 580
            +GVG  VG+G++V+TG VA++ AGP V +SF +A  AS+L ALCYAE  +R P   G AYL+ Y +  EL AFL+   ++L+Y IG A++AR+ + Y+ S+    +  F + ++ SW    +GH
Sbjct:   45 LGVGGMVGSGLYVLTGAVAKEVAGPAVLLSFGVAAVASLLAALCYAEFGARVPRT-GSAYLFTYVSMGELWAFLIGWNVLLEYIIGGAAVARAWSGYLDSMFSHSIRNFTETHVGSWQVPLLGH 167          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR2_XENLA (Low affinity cationic amino acid transporter 2 OS=Xenopus laevis GN=slc7a2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.907e-19
Identity = 61/177 (34.46%), Postives = 93/177 (52.54%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGT---------XXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTVVKVIIVI 730
            +GVG+++GAG++V+ G VA+ D+GP + ISFL+A  ASVL  LCYAE  +R P + G AYLY+Y    EL AF+    L+L Y IG +S+AR+ ++           F E +   IG+    FLG T                            +GV ES+ +N   T + +++++
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKVDSGPSIIISFLIAALASVLAGLCYAEFGARVP-LTGSAYLYSYVTVGELWAFITGWNLILSYVIGTSSVARAWSA----------TFDELVGKKIGN----FLGNTMHMDLPGLAEYPDIFAVCLIILLAGLLSFGVKESTAVNKVFTAINILVLL 203          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: YFNA_BACSU (Uncharacterized amino acid permease yfnA OS=Bacillus subtilis GN=yfnA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 60/168 (35.71%), Postives = 87/168 (51.79%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSILELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTVVKVIIVI 730
            +G+G  +G GIFV+TGTVA   AGP + ISF+LAG A  L A CYAE +S  P + G  Y Y+Y    EL AFL+   LML+Y I  +++A   +SY  S+L     F  +IP+ +        G                      GV ES+  N+ + ++K+ I++
Sbjct:   34 LGIGCVIGTGIFVITGTVAATGAGPALIISFILAGLACALAAFCYAEFSSSIP-ISGSVYSYSYVTLGELLAFLIGWDLMLEYVIALSAVATGWSSYFQSLL---AGFNLHIPAALTGAPGSMAGAVFNLPAAVIILLITAIVSR--GVKESTRFNNVIVLMKIAIIL 195          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR2_CHICK (Low affinity cationic amino acid transporter 2 OS=Gallus gallus GN=SLC7A2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL--ELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTVVKVIIVI 730
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y A  EL AF+    L+L Y IG +S+AR+ +     +L  ++  FFK             + G                     +GV ES+ +N   T + +++++
Sbjct:   41 LGVGSTLGAGVYVLAGEVAKSDSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVAVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLGKQISHFFKTYFKM-------NYPGLAEYPDFFAVFLILLLSGLLSFGVKESAWVNKIFTAINILVLL 202          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: S7A14_MOUSE (Probable cationic amino acid transporter OS=Mus musculus GN=Slc7a14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 529
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: S7A14_HUMAN (Probable cationic amino acid transporter OS=Homo sapiens GN=SLC7A14 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 529
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: S7A14_BOVIN (Probable cationic amino acid transporter OS=Bos taurus GN=SLC7A14 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.178e-18
Identity = 46/101 (45.54%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVARD-AGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSI 529
            +GVG+ VG G++VV+G VA++ AGPGV +SF++A  AS+L+ +CYAE   R P   G AY Y+Y    E  AF +   L+L+Y IG A+ A +L+S   S+
Sbjct:   61 LGVGSCVGTGMYVVSGLVAKEMAGPGVIVSFIIAAVASILSGVCYAEFGVRVPKTTGSAYTYSYVTVGEFVAFFIGWNLILEYLIGTAAGASALSSMFDSL 161          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR2_PIG (Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 56/170 (32.94%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL--ELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTVVKVIIVI 730
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+ +  +  +L  ++  FF+             + G                     +GV ES+ +N   T V +++++
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTLDELLNKQIGQFFRTYFKM-------NYTGLAEYPDFSAVCLILLLAGLLSFGVKESAWVNKVFTAVNILVLL 203          
BLAST of CX043321 vs. ExPASy Swiss-Prot
Match: CTR2_RAT (Low affinity cationic amino acid transporter 2 OS=Rattus norvegicus GN=Slc7a2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 56/170 (32.94%), Postives = 89/170 (52.35%), Query Frame = 2
Query:  230 IGVGASVGAGIFVVTGTVAR-DAGPGVTISFLLAGAASVLNALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFAQLMLDYHIGAASIARSLASYVVSIL--ELFPFFKENIPSWIGHGGEEFLGGTXXXXXXXXXXXXXXXXXXCWGVGESSVLNSCMTVVKVIIVI 730
            +GVG+++GAG++V+ G VA+ D+GP + +SFL+A  ASV+  LCYAE  +R P   G AYLY Y    EL AF+    L+L Y IG +S+AR+ +     +L  ++  FFK             + G                     +GV ES+ +N   T + +++++
Sbjct:   42 LGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASVMAGLCYAEFGARVPK-TGSAYLYTYVTVGELWAFITGWNLILSYVIGTSSVARAWSGTFDELLNKQIGQFFKTYFKM-------NYTGLAEYPDFFAVCLVLLLAGLLSFGVKESAWVNKFFTAINILVLL 203          
The following BLAST results are available for this feature:
BLAST of CX043321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CTR4_MOUSE9.638e-2140.71Cationic amino acid transporter 4 OS=Mus musculus ... [more]
CTR4_HUMAN2.374e-1942.74Cationic amino acid transporter 4 OS=Homo sapiens ... [more]
CTR2_XENLA6.907e-1934.46Low affinity cationic amino acid transporter 2 OS=... [more]
YFNA_BACSU9.021e-1935.71Uncharacterized amino acid permease yfnA OS=Bacill... [more]
CTR2_CHICK9.021e-1933.53Low affinity cationic amino acid transporter 2 OS=... [more]
S7A14_MOUSE1.178e-1845.54Probable cationic amino acid transporter OS=Mus mu... [more]
S7A14_HUMAN1.178e-1845.54Probable cationic amino acid transporter OS=Homo s... [more]
S7A14_BOVIN1.178e-1845.54Probable cationic amino acid transporter OS=Bos ta... [more]
CTR2_PIG1.539e-1832.94Low affinity cationic amino acid transporter 2 OS=... [more]
CTR2_RAT2.010e-1832.94Low affinity cationic amino acid transporter 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10C09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C09-F18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043321 ID=CX043321; Name=CX043321; organism=Citrus sinensis; type=EST; length=731bp
CGACAATTAATAAAATTTATCAATCATGGGAGGTGAAAACGTTCAGATCG
AAAAAAGCAACAATAATTCGTCATCGTCATCATCACCATCTGCGTCAGGT
CCACCACCCACGTGTTTCTCTCATTTCTGGTCTTCAGCTCTCCGAGCCAA
AACCCTAACTGCTCCGTCCGTCCGTACAAATGATGGCGAAGGACTTTTAC
GGCGGCTCGGACTCTTCGAACTGGTGCTCATCGGCGTCGGCGCGTCTGTT
GGCGCCGGAATATTCGTTGTCACCGGTACCGTGGCTCGCGACGCCGGTCC
AGGAGTTACAATTAGTTTCTTACTTGCTGGAGCAGCTTCTGTGTTAAATG
CACTCTGTTATGCTGAGCTGGCATCTCGTTTTCCTGCCGTTGTTGGGGGA
GCATACTTGTATGCGTATACAGCATTCAATGAACTTACAGCTTTTCTTGT
TTTTGCACAACTTATGTTGGACTACCATATTGGTGCAGCGAGCATAGCAC
GAAGCTTAGCTAGCTATGTAGTTTCAATTTTGGAGCTCTTTCCCTTTTTC
AAAGAAAACATACCAAGCTGGATTGGACATGGTGGTGAAGAGTTCTTGGG
AGGAACTCTATCCATCAATATATTAGCTCCAATTCTCCTTGCACTTCTGA
CTATAGTTTTATGTTGGGGTGTCGGTGAATCTTCTGTTTTGAACTCGTGC
ATGACCGTTGTAAAGGTTATCATTGTCATTG
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