EY679002

Overview
NameEY679002
Unique NameEY679002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length964
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY679002 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.353e-20
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:   83 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAKVFDKPTHPNSPTVYD 409
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98
The following BLAST results are available for this feature:
BLAST of EY679002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.353e-2049.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-401-053-H05-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679002 ID=EY679002; Name=EY679002; organism=Citrus sinensis; type=EST; length=964bp
CCCGGGAAATTCCCGGGGTCGACCCCGGCGTCCGCGGACGCGTGGGGATT
TATAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGG
GACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAG
GAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGT
CGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGG
GCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGA
CAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGG
GTATCGGTGCAAAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACT
GTTTATGACTGCTACCAAATAAAGGCTAAGAGGAAGGAGGAAAACGTGGC
ACTCTGTCTCATGGGCCCGTTGAAATAAATCTTTTGTCTTATTCAGCTTT
ACAGTGGGGAGAACAAGAGAAAGCATTCATCACTGAGTGGATGATACGCT
CCAGCGAATGTAAATGATTGTGATGGGTCACCCAACACACCCGAATGAGT
TGCCTGGAGTTCTGAAAAAAAGGGCCCTTTCCTTTTTGAATTTTCACAAC
GAAGTCCATTGCCCTTTTGGTTAATGGTAATTTGGAAATAAGTGGCCATT
CCCTATCTAAAATTTTGGTTTTTAAAAATTGCCGGCTGGACCTAAAAGTA
AACTTAAAAAAATGGTGGAGGGATTTTTTAATTCCAAAAAAAAATTATAA
TAATTGGTATTTGGGAAAGGAAAGAATTGGACAAACCTCGTGAGGAGAGA
AAATTTATAAAAGGTTGCGGGGGGTTTTTTTGTGATAAAGAGAACCGTTG
TTTTTTATCACTAGCAACTTATTTACGATAAGCGCTCGGAAATTTTACCC
CATCTTCGAGGGAG
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