CV884614
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1) HSP 1 Score: 267.314 bits (682), Expect = 6.369e-71 Identity = 130/193 (67.36%), Postives = 154/193 (79.79%), Query Frame = 1 Query: 4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 582 +MRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN EYV+ + QKANE I KCLG+ LY+ Sbjct: 99 LMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1) HSP 1 Score: 263.848 bits (673), Expect = 7.042e-70 Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1 Query: 4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKK 558 +MRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN EYV+ +E K+NEA+ K Sbjct: 93 LMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 1.328e-68 Identity = 130/191 (68.06%), Postives = 147/191 (76.96%), Query Frame = 1 Query: 10 RYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 582 RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I DIA+RA K F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN EYV+ E QKANE + KCLG+Y Y+ Sbjct: 102 RYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22 Identity = 57/158 (36.08%), Postives = 94/158 (59.49%), Query Frame = 1 Query: 4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 441 ++R ++YDP+FALG T +DR M+GY + D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E++ L +IA+ F YSR FA+GLF LLEL+ N T+ L +C VLN+++ + +DL++YR Sbjct: 39 LLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20 Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1 Query: 25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 438 Y Y+P +ALG VT +DR M+GY ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK + L D S F YSR FA+GLF LLE+ + L+K+C LN+ + + +D+D+Y Sbjct: 46 YSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20 Identity = 51/149 (34.23%), Postives = 87/149 (58.39%), Query Frame = 1 Query: 25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444 + Y+P++ALG VT +DR MEGY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ +DL++YR+ Sbjct: 46 FSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19 Identity = 50/149 (33.56%), Postives = 88/149 (59.06%), Query Frame = 1 Query: 25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444 + Y+P++ALG VT +DR M+GY + D+E+IF A A++++P++YR DA++L+ A+ + LV + S+ + + L + + NF YSR FA+GLF LLE +N L+ + A L+++ + +DL++YR+ Sbjct: 46 FSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19 Identity = 52/153 (33.99%), Postives = 91/153 (59.48%), Query Frame = 1 Query: 25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 444 + Y+P++ALG VT +DR M+GY + D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +++ L IA NF Y+R FA+G+F LLE ++ E + E L A+ L+V+ +++DL++YR+ Sbjct: 46 FSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19 Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 1 Query: 4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444 ++R +T+ YDPVFALG VT ++R M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G RA + F YSR FAVGLF LLE A A VL+++ V+++ + +DL+ YR+ Sbjct: 39 LLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18 Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 1 Query: 25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 444 +QYDPV+ALG VT + R M+GY D D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + N I + G N + Y+R FA+G++ +L E+ TE V++++ VL++ + + +DLD+YR+ Sbjct: 46 FQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195 The following BLAST results are available for this feature:
BLAST of CV884614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884614 ID=CV884614; Name=CV884614; organism=Citrus sinensis; type=EST; length=757bpback to top |