CV884614

Overview
NameCV884614
Unique NameCV884614
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7710 contig Csv1_Contig7710:501..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ARATH (Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis thaliana GN=THF1 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 6.369e-71
Identity = 130/193 (67.36%), Postives = 154/193 (79.79%), Query Frame = 1
Query:    4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 582
            +MRYK+TY+YDPVFALGFVTVYD+LMEGYPSD+DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV+F SKEG++E +L DIA RA  K  FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+NK+SVDRDLDVYRN             EYV+          + QKANE I KCLG+ LY+
Sbjct:   99 LMRYKKTYRYDPVFALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTLYN 291          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ORYSJ (Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp. japonica GN=THF1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 7.042e-70
Identity = 130/185 (70.27%), Postives = 148/185 (80.00%), Query Frame = 1
Query:    4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKK 558
            +MRYK TYQYD VFALGFVTVYD+LMEGYPS+EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q  +SLVEF SK+GE+E IL DI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA LN+NKRSVDRDLDVYRN             EYV+         +E  K+NEA+ K
Sbjct:   93 LMRYKTTYQYDAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_SOLTU (Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum GN=THF1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.328e-68
Identity = 130/191 (68.06%), Postives = 147/191 (76.96%), Query Frame = 1
Query:   10 RYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNXXXXXXXXXXXXXEYVDXXXXXXXXXTEPQKANEAIKKCLGEYLYS 582
            RYK++YQYDPVFALGFVTVYD+LMEGYPS+EDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F SKEGE+E I  DIA+RA  K  F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+SVDRDLDVYRN             EYV+          E QKANE + KCLG+Y Y+
Sbjct:  102 RYKKSYQYDPVFALGFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQAKELLKEYVE-REKKKRGERETQKANETVTKCLGDYQYA 291          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ACAM1 (Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.467e-22
Identity = 57/158 (36.08%), Postives = 94/158 (59.49%), Query Frame = 1
Query:    4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNKRSVDRDLDVYR 441
            ++R    ++YDP+FALG  T +DR M+GY  + D++AIF A   A + DP Q + D Q+L E A+ ++A  ++++ ++       E++  L +IA+       F YSR FA+GLF LLEL+  N T+        L  +C VLN+++  + +DL++YR
Sbjct:   39 LLRVNEDFRYDPIFALGVTTSFDRFMDGYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDELQWQLRNIAQNP----KFKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISESKLQKDLEIYR 192          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_TRIEI (Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.000e-20
Identity = 56/147 (38.10%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSVDRDLDVY 438
            Y Y+P +ALG VT +DR M+GY   ED+ +IF A I   +EDP +YR DA+ LE+ A   +AS ++ +   SK  +    L D     S    F YSR FA+GLF LLE+ +             L+K+C  LN+ +  + +D+D+Y
Sbjct:   46 YSYNPFYALGVVTAFDRFMQGYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQYLQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKLLKDIDLY 192          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ANASP (Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=thf1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.683e-20
Identity = 51/149 (34.23%), Postives = 87/149 (58.39%), Query Frame = 1
Query:   25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444
            + Y+P++ALG VT +DR MEGY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++     +DL++YR+
Sbjct:   46 FSYNPIYALGVVTTFDRFMEGYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRS 194          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_ANAVT (Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=thf1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.540e-19
Identity = 50/149 (33.56%), Postives = 88/149 (59.06%), Query Frame = 1
Query:   25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV--EGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444
            + Y+P++ALG VT +DR M+GY  + D+E+IF A   A++++P++YR DA++L+  A+    + LV + S+   +  +  L    +  +   NF YSR FA+GLF LLE +N             L+ + A L+++   + +DL++YR+
Sbjct:   46 FSYNPIYALGVVTTFDRFMQGYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIASNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRS 194          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_NOSP7 (Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=thf1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 52/153 (33.99%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGEVEGILNDIAERASGKGNFSYSRFFAVGLFRLLELAN----ATEPTVLEKLCAV---LNVNKRSVDRDLDVYRN 444
            + Y+P++ALG VT +DR M+GY  + D+E+IF A   A+++DP+ YR DA++L+  A+G     L+       +  ++ +++  L  IA       NF Y+R FA+G+F LLE ++      E  + E L A+   L+V+   +++DL++YR+
Sbjct:   46 FSYNPIYALGVVTTFDRFMQGYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDADLQAQLQAIANNP----NFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVSDDKLNKDLELYRS 194          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_CYAP4 (Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=thf1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.332e-19
Identity = 59/155 (38.06%), Postives = 88/155 (56.77%), Query Frame = 1
Query:    4 VMRYKRTYQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERA-SGKGNFSYSRFFAVGLFRLLELA-------NATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 444
            ++R  +T+ YDPVFALG VT ++R M+GY    D+ +IF A   A + DP+Q + DAQ+L    RGQ+  SL+++ S    + G       RA +    F YSR FAVGLF LLE A        A    VL+++  V+++    + +DL+ YR+
Sbjct:   39 LLRVNQTFVYDPVFALGVVTTFERFMQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGDEQQNRLRAIASNPTFKYSRLFAVGLFTLLEQAEPELGKDEARLLQVLQQVGEVMHLPVEKMQKDLEQYRS 193          
BLAST of CV884614 vs. ExPASy Swiss-Prot
Match: THF1_CYAP7 (Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 52/150 (34.67%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   25 YQYDPVFALGFVTVYDRLMEGYPSDEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGILNDIAERASGKGN---FSYSRFFAVGLFRLL-----ELANATE--PTVLEKLCAVLNVNKRSVDRDLDVYRN 444
            +QYDPV+ALG VT + R M+GY  D D+E+IF A   ++  DP+QYR DA+++ E A+  +A  L+       +     N I +   G  N   + Y+R FA+G++ +L     E+   TE    V++++  VL++ +  + +DLD+YR+
Sbjct:   46 FQYDPVYALGVVTSFQRFMQGYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGENQILQTLIGIANAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHLPEEKMQKDLDLYRS 195          
The following BLAST results are available for this feature:
BLAST of CV884614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
THF1_ARATH6.369e-7167.36Protein THYLAKOID FORMATION 1, chloroplastic OS=Ar... [more]
THF1_ORYSJ7.042e-7070.27Protein THYLAKOID FORMATION1, chloroplastic OS=Ory... [more]
THF1_SOLTU1.328e-6868.06Protein THYLAKOID FORMATION1, chloroplastic OS=Sol... [more]
THF1_ACAM15.467e-2236.08Protein thf1 OS=Acaryochloris marina (strain MBIC ... [more]
THF1_TRIEI3.000e-2038.10Protein thf1 OS=Trichodesmium erythraeum (strain I... [more]
THF1_ANASP6.683e-2034.23Protein thf1 OS=Anabaena sp. (strain PCC 7120) GN=... [more]
THF1_ANAVT2.540e-1933.56Protein thf1 OS=Anabaena variabilis (strain ATCC 2... [more]
THF1_NOSP74.332e-1933.99Protein thf1 OS=Nostoc punctiforme (strain ATCC 29... [more]
THF1_CYAP44.332e-1938.06Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ... [more]
THF1_CYAP73.667e-1834.67Protein thf1 OS=Cyanothece sp. (strain PCC 7424) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008E08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884614 ID=CV884614; Name=CV884614; organism=Citrus sinensis; type=EST; length=757bp
GACGTGATGAGGTACAAAAGAACATACCAATATGACCCTGTGTTTGCCCT
TGGATTTGTCACTGTATATGATCGACTCATGGAAGGCTATCCAAGTGATG
AGGATCGAGAAGCCATCTTCCAAGCATACATTACGGCACTGAAGGAGGAT
CCAGAGCAATACAGAATTGATGCACAAAAGTTAGAGGAATGGGCTCGGGG
TCAGACTGCCAGTTCATTAGTTGAGTTCCCATCTAAAGAAGGAGAAGTTG
AGGGGATATTGAACGACATTGCAGAAAGAGCCAGCGGCAAGGGGAATTTC
AGCTACAGCCGTTTCTTTGCTGTTGGGCTGTTTCGCCTTCTTGAACTGGC
AAATGCAACTGAACCCACAGTGTTAGAAAAGCTTTGTGCAGTCTTAAATG
TTAACAAAAGAAGTGTGGATCGTGACCTTGATGTATATCGCAATTTATTA
TCCAAGCTGCTTCAAGCTAAAGAGTTGCTGAAGGAGTATGTGGATAGGGA
AAAGAAGAAGAGAGAAGAAAGGACAGAACCGCAAAAGGCTAATGAAGCCA
TTAAAAAATGTCTGGGAGAATACCTATATTCCCATCAGTAATTCAACCTG
TGAAGGAAGCCGGCAATGCTAATCATCTCTTGTGAAGTTTCCATCCCGTT
TTTGTCTGCTTTGCGGTAGAGTTGGAGCCTCAATGCTCCATGTACCATGT
TTTAAGCTTACAGGCTTGCATGTTTCAGTGTACTGTTTTTAATACGGGGA
TTTGCAT
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