CV884588

Overview
NameCV884588
Unique NameCV884588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:55..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.456e-84
Identity = 152/174 (87.36%), Postives = 167/174 (95.98%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR++SNFN VILKRLFMSKVNK PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFE 174          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 311.997 bits (798), Expect = 1.456e-84
Identity = 152/174 (87.36%), Postives = 166/174 (95.40%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MGIDL+AGGKSKK+KRTAPKSDD+YLKL VKLYRFLVRRT+S FN VILKRLFMSKVNK PLSLSRL+ FM GKEDKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFE 174          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.410e-79
Identity = 148/171 (86.55%), Postives = 160/171 (93.57%), Query Frame = 2
Query:   11 DLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            DL AGGK+KK+KRT+PKS+DIYLKLLVKLYRFLVRRTDSNFN VILKRLFMSKVN+PPLSLSRLI +M+GKE KI VVVG VTDDIR Y+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 170          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 2.330e-74
Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MGIDL+AGGKSKK+KRT PKSDD+YLKLLVK  R+LVRRT+S FN VILKRLFMSKVNK PLSLSRL+ +M GK+ KIAV+VGTVTDD+R  +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 1.326e-61
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MG+D +   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ FNKV+LKRLFMSK N+PPL+LSRLI  MK  G+E+KIAVVVGT+TDD+R   +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKGRKFE
Sbjct:    1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 2.954e-61
Identity = 118/176 (67.05%), Postives = 142/176 (80.68%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MGID +     +K +RT PKS D+YL+LLVKLYR+L RRT + FNK+ILKRLFMSK+ +PP+SLS+++ FMK  G+E   AV+VGTVTDD R +E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFE
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 3.858e-61
Identity = 119/176 (67.61%), Postives = 140/176 (79.55%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGTVTDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 5.039e-61
Identity = 118/176 (67.05%), Postives = 140/176 (79.55%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 6.581e-61
Identity = 116/176 (65.91%), Postives = 146/176 (82.95%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MGID +     +K  R  PKS+++YL LLVK+YRFL RR+ + FN+++LKRLFMS++NKP +SL+R+  FMK  G+E+ IAVVVGTVTDD+R Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:    1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFE 175          
BLAST of CV884588 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.466e-60
Identity = 118/176 (67.05%), Postives = 139/176 (78.98%), Query Frame = 2
Query:    2 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 523
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
The following BLAST results are available for this feature:
BLAST of CV884588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL183_ARATH1.456e-8487.3660S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL182_ARATH1.456e-8487.3660S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL18_CICAR1.410e-7986.5560S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH2.330e-7479.43Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_ICTPU1.326e-6167.6160S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_TIMBA2.954e-6167.0560S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_MOUSE3.858e-6167.6160S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_RAT5.039e-6167.0560S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_IXOSC6.581e-6165.9160S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_MACFA1.466e-6067.0560S ribosomal protein L18 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884588 ID=CV884588; Name=CV884588; organism=Citrus sinensis; type=EST; length=600bp
CATGGGTATCGATTTGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAA
CCGCTCCCAAGTCCGATGATATCTACCTTAAGCTCCTCGTCAAGTTGTAC
CGGTTTCTTGTTCGAAGAACCGACAGCAACTTTAATAAAGTGATTCTGAA
GAGGCTGTTTATGAGTAAAGTCAACAAGCCACCACTTTCACTCTCAAGGC
TCATCAACTTCATGAAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGG
ACAGTCACCGATGACATTAGGGCTTATGAGGTGCCGGCATTGAAGGTTAC
TGCTTTGAGGTTTACTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCG
GAGAGTGCTTGACTTTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAG
AACACGGTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAGGCAGTGAAGCA
CTTTGGTCCAGCTCCTGGTGTACCACACAGCCACACCAAGCCTTACGTGC
GATCAAAGGGAAGGAAGTTTGAGCGTGCTAGAGGAAGGAGGAACAGCAGG
GGTTTCAGAGTTTAAGTTTACTAAATTGTGAGGCAGTTGTGTCATTTCTT
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