CV884566

Overview
NameCV884566
Unique NameCV884566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.114e-45
Identity = 89/152 (58.55%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAVA + S  G KG + F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG H+NP  K HG PED  RHAGDLGN+  G DG A IN+ D    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.151e-45
Identity = 89/152 (58.55%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAVA + S  G KG ++F QEGDGPTT+ G++  L  G HGFH+H  GD  + C STG HFNP    HG PED  RHAGDLGN+ VG DG   +NIVD    IPL G NSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQ--IPLSGSNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 1.049e-44
Identity = 88/152 (57.89%), Postives = 104/152 (68.42%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAVA + S  G KG + F QEGDGPT + G++  L  G HGFH+H  GD  + C STG H+NP  K HG PED  RHAGDLGN+  G DG A IN+ D    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44
Identity = 89/152 (58.55%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAV  + S    KG +HF QEGDGPTT+ G++  L  G HGFHIH  GD  + C STG H+NP  K HG PED  RHAGDLGN+  G DG A I++VD    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.370e-44
Identity = 89/152 (58.55%), Postives = 105/152 (69.08%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAV  + S    KG +HF QEGDGPTT+ G++  L  G HGFHIH  GD  + C STG H+NP  K HG PED  RHAGDLGN+  G DG A I++VD    IPL GPNSIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQ--IPLTGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_CARPA (Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.337e-44
Identity = 88/152 (57.89%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAVA + S  G  G + F Q  DGPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K HG PED IRHAGDLGN+ VG DGK   +I+D    IPL GPNSI+GR+VV+H   DDLGK G+  SK  GNAG ++ACGVIGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQAADGPTTVTGEISGLKPGHHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDIRHAGDLGNVNVGDDGKVSFSIIDSQ--IPLTGPNSIVGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGVIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.800e-44
Identity = 87/152 (57.24%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAV  +    G  G++HF QE DGPTT+ G L  L+ G HGFH+H  GD  + C STG H+NP  K HG PED  RHAGDLGN+ VG DG A+  IVDK   IPL+G  SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG IGLQ
Sbjct:    2 VKAVTVLSGSGGVSGVIHFTQEEDGPTTVTGKLSGLAPGLHGFHVHALGDTTNGCLSTGPHYNPANKEHGAPEDETRHAGDLGNVTVGEDGTAEFTIVDKQ--IPLIGSGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLACGFIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.882e-44
Identity = 85/151 (56.29%), Postives = 104/151 (68.87%), Query Frame = 3
Query:  192 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            KAV  + S  G  G ++F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K HG PED +RHAGDLGNI VG DG A   I+D    IPL GPNSI+GR+VV+H + DDLG+ G+  SK  GNAG ++ACG+IGLQ
Sbjct:    3 KAVVVLSSSEGVSGTVYFAQEGDGPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPNGKEHGAPEDDVRHAGDLGNITVGDDGTATFTIIDSQ--IPLSGPNSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVACGIIGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.515e-43
Identity = 86/152 (56.58%), Postives = 103/152 (67.76%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VK VA + S  G  G ++F QEGDGPTT+ G +  L  G HGFH+H  GD  + C STG HFNP  K HG P+D +RHAGDLGN+ VG DG A   IVDK   IPL GP+SIIGR+VV+H   DDLGK G+  SK  GN G ++ACG+ GLQ
Sbjct:    2 VKGVAVLSSSEGVSGTIYFTQEGDGPTTVTGNVSGLKPGPHGFHVHALGDTTNGCLSTGPHFNPAGKEHGAPDDEVRHAGDLGNVTVGEDGTAAFTIVDKQ--IPLTGPHSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVACGINGLQ 151          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_NICPL (Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.515e-43
Identity = 86/152 (56.58%), Postives = 102/152 (67.11%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGLQ 644
            VKAVA + S  G  G + F Q+GD PTT+ G +  L  G HGFH+H  GD  + C STG H+NP  K HG PED +RHAGDLGNI VG DG A   + DK   IPL GP SIIGR+VV+H   DDLGK G+  SK  GNAG ++ACG+IGLQ
Sbjct:    2 VKAVAVLSSSEGVSGTIFFTQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTLTDKQ--IPLAGPQSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ 151          
The following BLAST results are available for this feature:
BLAST of CV884566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC4_MAIZE2.114e-4558.55Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_ANACO6.151e-4558.55Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC5_MAIZE1.049e-4457.89Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC1_ORYSJ1.370e-4458.55Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI1.370e-4458.55Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_CARPA2.337e-4457.89Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=S... [more]
SODC_PANGI6.800e-4457.24Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC_SPIOL8.882e-4456.29Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_PAUKA1.515e-4356.58Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_NICPL1.515e-4356.58Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbagi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884566 ID=CV884566; Name=CV884566; organism=Citrus sinensis; type=EST; length=774bp
CTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGTAAGAGTCTT
TAATTTCAACTGGAATCATAAGAGTTATAGTTTGTTAGCCAATTACTTAG
TAATCAGACAATTGAATGTTAATTCATGGCTAGCTGCTGCATGCGCGCAG
GTTTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTT
GCTTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACA
GGAAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGC
AGGGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTC
TGCCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAACATCATGGTGG
CCCAGAGGATTGGATTCGTCATGCCGGTGATTTAGGAAATATCTATGTTG
GTTTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATT
CCTCTTGTTGGGCCAAATTCCATTATCGGAAGATCTGTCGTGATACACGA
CAAGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATG
GAAATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGA
ATGGTCTCGGTTTGGACTCTATATTATAAATACTTTATCTGATGTTGAAT
AAAGTTTAGTTTAATATGCTTGAGAGTGACTTGATAAGAATGTTATCTGG
AATAAGATCAGCTAAAACTTTTGT
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