CV884551

Overview
NameCV884551
Unique NameCV884551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884551_ssr541 microsatellite CV884551_ssr541:541..550. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884551_ssr854 microsatellite CV884551_ssr854:854..871. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.786e-46
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = -1
Query:  525 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 821
            MDK PCNSQ+ EVRKGPWTMEEDLILINYIANHGEGVWNSLA++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNR   I KT  G
Sbjct:    1 MDKKPCNSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPG 99          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.084e-43
Identity = 81/99 (81.82%), Postives = 89/99 (89.90%), Query Frame = -1
Query:  525 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 821
            MDK PCNS + EVRKGPWTMEEDLILIN+I+NHGEGVWN++A++AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQLLIMELHAKWGNR   I K   G
Sbjct:    1 MDKKPCNSHDVEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPG 99          

HSP 2 Score: 84.7297 bits (208), Expect = 7.320e-16
Identity = 49/106 (46.23%), Postives = 60/106 (56.60%), Query Frame = -3
Query:  229 NRWSKIAKHLPGRTDNEIKNFW-RTRIQKQIKQAE-TFXXXXXXXXXXXXXXXXSTAAYTMEDYSAPQY--PLNNNMDPHQAFPLDNMAPIPSEVNENYWSMEDLW 534
            NRWSKIAKHLPGRTDNEIKN+W RTRIQK IKQAE +F                  ++    D++   Y    N NM  +  +P       P+E N+ +WSMEDLW
Sbjct:   88 NRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIGHINPEHSNEQASTSLLSSSCHADHAVESYSSSFNGNMGNNVQYP----NHFPTESNDYFWSMEDLW 189          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.260e-41
Identity = 80/93 (86.02%), Postives = 85/93 (91.40%), Query Frame = -1
Query:  525 NSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNRLVYIYKTTGG 803
            +S EAEVRKGPWTMEEDLILINYIANHG+GVWNSLAK+AGLKRTGKSCRLRWLNYLRPDV+RGNITPEEQL+IMELHAKWGNR   I K   G
Sbjct:   14 SSAEAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPG 106          

HSP 2 Score: 77.7962 bits (190), Expect = 8.948e-14
Identity = 56/136 (41.18%), Postives = 69/136 (50.74%), Query Frame = -3
Query:  214 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAE--TFXXXXXXXXXXXXXXXXSTAAY--------TMEDYS-APQYPLNNNMDPHQAFPLDNMA----------PIPSEVN----ENYWSMEDLW----LYNGD 534
            NRWSKIAKHLPGRTDNEIKNFWRTRIQK IKQ++  T                 ST+++         ME YS  P    + NM+    F   N +          P+P  V+    ENYW M+D+W    L NG+
Sbjct:   95 NRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTSSVGSHHSSEINDQAASTSSHNVFCTQDQAMETYSPTPTSYQHTNME----FNYGNYSAAAVTATVDYPVPMTVDDQTGENYWGMDDIWSSMHLLNGN 226          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.494e-36
Identity = 48/81 (59.26%), Postives = 65/81 (80.25%), Query Frame = -1
Query:  555 QEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 797
            QE   RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNR
Sbjct:    3 QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 83          

HSP 2 Score: 55.8398 bits (133), Expect = 2.494e-36
Identity = 22/32 (68.75%), Postives = 29/32 (90.62%), Query Frame = -3
Query:  439 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 534
            NRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:   82 NRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.497e-36
Identity = 47/80 (58.75%), Postives = 65/80 (81.25%), Query Frame = -1
Query:  555 EAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 794
            + E RKGPWT +ED++L+N++   G+  W+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP+E+ L++ELHAKWGNR
Sbjct:    5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 84          

HSP 2 Score: 55.8398 bits (133), Expect = 2.497e-36
Identity = 22/32 (68.75%), Postives = 29/32 (90.62%), Query Frame = -3
Query:  439 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQ 534
            NRWSKIA+ LPGRTDNEIKN+WRT ++K+ ++
Sbjct:   83 NRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 4.206e-36
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = -1
Query:  555 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 821
            M +TPC  ++  +++G WT EED +L NYIA HGEG W SL K AGL R GKSCRLRW+NYLR DVKRGNI+ EE+ +I++LHA  GNR
Sbjct:    1 MGRTPC-CEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADVKRGNISKEEEDIIIKLHATLGNR 88          

HSP 2 Score: 53.5286 bits (127), Expect = 4.206e-36
Identity = 21/30 (70.00%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  445 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 534
            NRWS IA HLPGRTDNEIKN+W + + +QI
Sbjct:   87 NRWSLIASHLPGRTDNEIKNYWNSHLSRQI 116          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.057e-35
Identity = 54/89 (60.67%), Postives = 69/89 (77.53%), Query Frame = -1
Query:  555 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 821
            M + PC  ++  +++G WT EED IL NYI ++GEG W SL K AGLKR GKSCRLRW+NYLR D+KRGNITPEE+ L+++LH+  GNR
Sbjct:    1 MGRAPC-CEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNITPEEEELVVKLHSTLGNR 88          

HSP 2 Score: 50.447 bits (119), Expect = 2.057e-35
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  445 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 534
            NRWS IA HLPGRTDNEIKN+W + + +++
Sbjct:   87 NRWSLIAGHLPGRTDNEIKNYWNSHLSRKL 116          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB3_ARATH (Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.508e-35
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = -1
Query:  555 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 821
            M ++PC  ++A + KG WT EED +L++YI  HGEG W SL +AAGL+R GKSCRLRW+NYLRPD+KRGN T EE  LI++LH+  GN+
Sbjct:    1 MGRSPC-CEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGNK 88          

HSP 2 Score: 48.9062 bits (115), Expect = 3.508e-35
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  445 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 534
            N+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:   87 NKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.711e-34
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = -1
Query:  555 MDKTPCNSQEAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 821
            M ++PC  ++A   KG WT EED  LINYI  HGEG W SL KAAGL R GKSCRLRW+NYLRPD+KRGN T EE  +I++LH+  GN+
Sbjct:    1 MGRSPC-CEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDEIIIKLHSLLGNK 88          

HSP 2 Score: 48.1358 bits (113), Expect = 1.711e-34
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  445 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQI 534
            N+WS IA  LPGRTDNEIKN+W T I++++
Sbjct:   87 NKWSLIAGALPGRTDNEIKNYWNTHIKRKL 116          
BLAST of CV884551 vs. ExPASy Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.909e-34
Identity = 47/78 (60.26%), Postives = 61/78 (78.21%), Query Frame = -1
Query:  555 EVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVKRGNITPEEQLLIMELHAKWGNR 788
            E+RKGPWT +EDL L+  +   GE  W+ +AK +GL RTGKSCRLRW+NYL P +KRG ++P E+ LI+ELHA+WGNR
Sbjct:    7 EIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMSPHEERLILELHARWGNR 84          

HSP 2 Score: 55.4546 bits (132), Expect = 2.909e-34
Identity = 21/35 (60.00%), Postives = 31/35 (88.57%), Query Frame = -3
Query:  430 NRWSKIAKHLPGRTDNEIKNFWRTRIQKQIKQAET 534
            NRWS+IA+ LPGRTDNEIKN+WRT ++K+ ++ ++
Sbjct:   83 NRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKS 117          
The following BLAST results are available for this feature:
BLAST of CV884551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
MYB05_ANTMA1.786e-4687.88Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MYB40_ANTMA1.084e-4381.82Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYB21_ARATH2.260e-4186.02Transcription factor MYB21 OS=Arabidopsis thaliana... [more]
MYB48_ARATH2.494e-3659.26Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB59_ARATH2.497e-3658.75Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYBP_MAIZE4.206e-3661.80Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB12_ARATH2.057e-3560.67Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
MYB3_ARATH3.508e-3559.55Transcription factor MYB3 OS=Arabidopsis thaliana ... [more]
MYB30_ANTMA1.711e-3461.80Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYBA2_ORYSJ2.909e-3460.26Myb-related protein MYBAS2 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884551 ID=CV884551; Name=CV884551; organism=Citrus sinensis; type=EST; length=872bp
TTTTTTTTTTTTTTAAGTTTTCTCATCACTGTATATAAGTGGGATGCTAT
ATAAATACATATATATAAGATCTGCTATATCAACACATATATATAAGGTC
CTATATATTACAAGCCATAGATATAACTAAAGATAAAAGTTTGAGCCCCG
CTAATATTATAAGGATCCAAAATCATAACTCGAACCCATGCATATAAATA
ATCATGGTGCTTAATCCCCGTTATATAACCAGAGATCCTCCATACTCCAG
TAGTTTTCATTGACTTCAGAAGGAATAGGTGCCATATTATCTAATGGAAA
AGCTTGATGAGGATCCATATTATTGTTTAATGGATATTGTGGTGCTGAAT
AATCTTCCATGGTGTATGCAGCAGTGGACATTTGGCTTGAGCTTGCTTGC
TCATTGGCCTCTGAACTTTGCCCTGAAAATGTTTCTGCTTGCTTAATTTG
CTTCTGGATTCTGGTTCTCCAAAAATTCTTAATTTCATTGTCGGTCCTTC
CTGGTAGATGCTTTGCAATTTTGGACCACCTGTTGTCTTGTATATATATA
CTAACCTGTTTCCCCACTTGGCATGAAGCTCCATGATCAAAAGCTGCTCC
TCTGGTGTAATATTCCCCCTCTTAACGTCCGGTCGGAGATAGTTCAGCCA
CCTGAGCCGGCAACTCTTTCCGGTACGTTTTAGGCCAGCTGCTTTAGCTA
GTGAGTTCCAGACGCCTTCGCCGTGATTTGCTATATAGTTGATGAGGATC
AAGTCTTCTTCCATGGTCCATGGCCCCTTTCGGACTTCAGCTTCTTGAGA
ATTGCATGGAGTTTTATCCATCTCTTAATTTACATAGAGAAATTAAGAGG
AGGAGAAGAAGAAGAAGAAGAA
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