CV884543

Overview
NameCV884543
Unique NameCV884543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13762 contig Csv1_Contig13762:290..1224. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 453.751 bits (1166), Expect = 6.660e-127
Identity = 226/243 (93.00%), Postives = 238/243 (97.94%), Query Frame = -3
Query:  205 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 933
            ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSFGTT++RMLYIEHCANS+AVT+FIRGGNKMMIEETKRSIHDALCVARNLIRN SIVYGGGAAEIACS+AVDAAAD+YPGVEQYAIRAFA+ALD++PMALAENSGLQPIETLSAVK+QQI+EN P  GIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS SEY
Sbjct:  293 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAEALDSVPMALAENSGLQPIETLSAVKSQQIKENIPFYGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISNSEY 535          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.698e-122
Identity = 218/243 (89.71%), Postives = 233/243 (95.88%), Query Frame = -3
Query:  205 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 933
            ATLVICQWGFDDEANHLLM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  293 ATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 439.113 bits (1128), Expect = 1.698e-122
Identity = 218/243 (89.71%), Postives = 233/243 (95.88%), Query Frame = -3
Query:  205 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY 933
            ATLVICQWGFDDEANHLLM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGGNKMMIEETKRSIHDALCVARNLI NNSIVYGGG+AEI+CSIAV+AAADR+PGVEQYAIRAFADALDAIP+ALAENSGL PI+TL+ VK+Q ++ENN  CGIDCNDVGTNDM+EQNVFETLIGKQQQILLATQVVKMILKIDDVI+PSEY
Sbjct:  293 ATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMIEETKRSIHDALCVARNLIINNSIVYGGGSAEISCSIAVEAAADRHPGVEQYAIRAFADALDAIPLALAENSGLPPIDTLTVVKSQHVKENNSRCGIDCNDVGTNDMKEQNVFETLIGKQQQILLATQVVKMILKIDDVITPSEY 535          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.709e-98
Identity = 175/242 (72.31%), Postives = 207/242 (85.54%), Query Frame = -3
Query:  208 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 933
            A L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  297 ANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.709e-98
Identity = 175/242 (72.31%), Postives = 207/242 (85.54%), Query Frame = -3
Query:  208 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 933
            A L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  297 ANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.496e-98
Identity = 174/242 (71.90%), Postives = 206/242 (85.12%), Query Frame = -3
Query:  208 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 933
            A L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAE +C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E NP  GIDC   GTNDM++Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  297 ANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAETSCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKEMNPALGIDCLHKGTNDMKQQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 3.224e-97
Identity = 173/242 (71.49%), Postives = 206/242 (85.12%), Query Frame = -3
Query:  208 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 933
            A L ICQWGFDDEANHLL+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+VRE SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  297 ANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 1.225e-96
Identity = 172/242 (71.07%), Postives = 206/242 (85.12%), Query Frame = -3
Query:  208 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSE 933
            A L ICQWGFDDEANHLL+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+V+E SFGTT+D+ML IE C NSRAVTIFIRGGNKM+IEE KRS+HDALCV RNLIR+N +VYGGGAAEI+C++AV   AD+ P +EQYA+RAFADAL+ IPMAL+ENSG+ PI+T++ V+ +Q++E+NP  GIDC   G+NDM+ Q+V ETLIGK+QQI LATQ+V+MILKIDD+  P E
Sbjct:  297 ANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDIRKPGE 538          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.956e-94
Identity = 167/238 (70.17%), Postives = 198/238 (83.19%), Query Frame = -3
Query:  220 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 933
            A LVICQWGFDDEANHLL+  NLPAVRWVGG++LE IA+ATGGRIV RF++++ +KLG+AGLVRE  FGTTQDR L IE C N+ AVTIF+RGGNKM++EE KRSIHDALCV RNLIR+N ++YGGG++EI+C + + A AD    +EQYA+RAFADALDAIP+ALAENSGL  IE+LS VK  QI+E NP  GIDCN   TNDM+ Q+VF+TL GK QQ LLA QVVKMILKIDD+I
Sbjct:  293 ANLVICQWGFDDEANHLLLQNNLPAVRWVGGLDLEKIAMATGGRIVARFEDVSADKLGRAGLVREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII 530          
BLAST of CV884543 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.831e-92
Identity = 159/238 (66.81%), Postives = 202/238 (84.87%), Query Frame = -3
Query:  220 ATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRNNSIVYGGGAAEIACSIAVDAAADRYPGVEQYAIRAFADALDAIPMALAENSGLQPIETLSAVKNQQIRENNPNCGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVI 933
            A LVICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIAT GRIVPRF++L+ +KLG AG+VRE SFGTT+D++L IE CANSRAVT+F+RG NKM+++E KR++HDALCV RNLIR+N +VYGGGAAEI+CS+AV   A++ PG++QY++ AFADALD IP+ALAENSGL  IE L+AVK + ++EN    GIDC   G+NDMR+Q V + LIGK+QQ+LLATQ+ +M+LK++D+I
Sbjct:  299 ANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
The following BLAST results are available for this feature:
BLAST of CV884543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPE_ARATH6.660e-12793.00T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE2_AVESA1.698e-12289.71T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE1_AVESA1.698e-12289.71T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_MACFA1.709e-9872.31T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.709e-9872.31T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_PONAB6.496e-9871.90T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_RAT3.224e-9771.49T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE1.225e-9671.07T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_DICDI1.956e-9470.17T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_SCHPO1.831e-9266.81T-complex protein 1 subunit epsilon OS=Schizosacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008B04_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884543 ID=CV884543; Name=CV884543; organism=Citrus sinensis; type=EST; length=935bp
TTTTTTTTTTTTTTTAACAGCAAAATCATCAATTCTCACTACCAGAAAAA
GTAACTCACGGTACAATTTTAACAAAAACCAACCCATAACCTTTAAAGTC
AGTCGTTATCAAGTGGACAGGGTCGATACCAAGCCAACAAAATACATGAA
ATGCATTCTTGGTGAAGCAAAATCAAACAGAAACTTAGACCTTAGAATGA
ATCAATATTCAGAGGGGGAAATGACATCATCAATTTTCAAAATCATCTTC
ACAACTTGTGTTGCGAGAAGAATCTGCTGCTGCTTCCCAATCAAAGTCTC
AAAGACATTTTGCTCACGCATGTCATTGGTTCCAACATCATTGCAGTCTA
TTCCGCAGTTTGGATTATTCTCCCTAATTTGCTGATTTTTCACAGCCGAT
AGCGTCTCAATAGGTTGGAGACCACTATTTTCTGCAAGTGCCATCGGGAT
AGCATCCAACGCATCTGCAAATGCCCTGATAGCATACTGTTCAACTCCCG
GATATCTATCTGCAGCTGCATCTACAGCAATTGAGCAAGCTATCTCAGCT
GCACCCCCGCCATACACAATAGAATTGTTGCGAATCAGATTCCTAGCCAC
ACACAAGGCATCATGTATGCTCCGCTTGGTCTCCTCTATCATCATTTTGT
TACCTCCACGGATGAAAATGGTTACAGCCCTAGAATTTGCACAGTGTTCA
ATGTACAGCATTCTATCTTGTGTAGTACCAAAAGACTTTTCTCGAACCAA
ACCAGCCTTTCCAAGTTTTTCTGGTGTCAACTCCTGAAACCTTGGAACAA
TTCTTCCACCTGTGGCTATGGCAATCAGCTCCAATTCTACACCACCAACC
CAGCGGACAGCAGGCAGGTTCCTGTGCATTAATAAGTGATTAGCCTCGTC
ATCGAAACCCCATTGACAGATGACCAAGGTAGCAC
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