CV884540

Overview
NameCV884540
Unique NameCV884540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884540_ssr314 microsatellite CV884540_ssr314:314..325. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL7_ARATH (Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 80/106 (75.47%), Postives = 91/106 (85.85%), Query Frame = 2
Query:   98 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERLMLSGMHTV DIFCCCCGQ VGWKY +AH+K QKYKEGKFVLER RI
Sbjct:    1 MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLERGRI 105          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL_SOLTU (Protein yippee-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.627e-34
Identity = 63/106 (59.43%), Postives = 86/106 (81.13%), Query Frame = 2
Query:   98 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            MGR+F++ L+G+  Y C+ C +HLAL+++++S SF+C+ G+AYLFS VVN+  G  E R+M++GMHTV DIFC CCG IVGWKY  AH+K+QKYKEGK VLER++I
Sbjct:    1 MGRLFVLTLEGK-IYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMMMTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERFKI 105          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL1_ARATH (Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 57/106 (53.77%), Postives = 85/106 (80.19%), Query Frame = 2
Query:   98 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            MGR+F+++L+G   Y C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+M++G HTV DIFC  CG +VGWKY  A+DK+QKYKEGKF+LER+++
Sbjct:    1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVMITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERFKV 105          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL3_ARATH (Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.382e-31
Identity = 63/106 (59.43%), Postives = 82/106 (77.36%), Query Frame = 2
Query:   98 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+M++GMHTV DI+C  CG  VGWKY  A +KNQKYKEGK VLER+++
Sbjct:    1 MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMMMTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERYKV 105          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL4_ARATH (Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.806e-30
Identity = 57/106 (53.77%), Postives = 81/106 (76.42%), Query Frame = 2
Query:   98 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            MGR+F+V+L+G  Y  C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+M++G+H V DIFC  CG  VGWKY  AH+K+QKYKEGK VLE ++I
Sbjct:    1 MGRVFMVDLEGNIYI-CKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMMITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELYKI 105          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL_ORYSJ (Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.676e-26
Identity = 51/91 (56.04%), Postives = 70/91 (76.92%), Query Frame = 2
Query:  143 KCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            KCR C    A AD++LS  F  R GRAYLF  VVNI LGP E+R +++G+HTV+DI+C CC QI+GW+Y  A+++++KYKEGKF+LE+ R+
Sbjct:   24 KCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKARM 114          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YIPL6_ARATH (Protein yippee-like At4g27745 OS=Arabidopsis thaliana GN=At4g27745 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 46/96 (47.92%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  128 GRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLERWRI 415
            G   Y C  C +H+ L D ++S +F  R GRA+LFS  +NI++GP+E+R +L+G+HTV DI C  C + +GWKY  A++ +QKYKEGKF+ E+ +I
Sbjct:    6 GPRLYSCCNCRNHVGLHDDIISKAFQGRTGRAFLFSHAMNIVVGPKEDRNLLTGLHTVADISCVDCNEPLGWKYERAYETSQKYKEGKFIFEKAKI 101          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YPEL4_RAT (Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  140 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 403
            Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YPEL4_MOUSE (Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  140 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 403
            Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116          
BLAST of CV884540 vs. ExPASy Swiss-Prot
Match: YPEL4_HUMAN (Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  140 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVAAHDKNQKYKEGKFVLE 403
            Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC  C   +GWKY  A + +QKYKEGK+++E
Sbjct:   29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCESCKTTLGWKYEQAFETSQKYKEGKYIIE 116          
The following BLAST results are available for this feature:
BLAST of CV884540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
YIPL7_ARATH1.473e-4175.47Protein yippee-like At5g53940 OS=Arabidopsis thali... [more]
YIPL_SOLTU6.627e-3459.43Protein yippee-like OS=Solanum tuberosum PE=2 SV=1[more]
YIPL1_ARATH1.632e-3253.77Protein yippee-like At3g08990 OS=Arabidopsis thali... [more]
YIPL3_ARATH1.382e-3159.43Protein yippee-like At3g11230 OS=Arabidopsis thali... [more]
YIPL4_ARATH5.806e-3053.77Protein yippee-like At3g55890 OS=Arabidopsis thali... [more]
YIPL_ORYSJ8.676e-2656.04Putative yippee-like protein Os10g0369500 OS=Oryza... [more]
YIPL6_ARATH1.531e-2247.92Protein yippee-like At4g27745 OS=Arabidopsis thali... [more]
YPEL4_RAT5.819e-2252.27Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel... [more]
YPEL4_MOUSE5.819e-2252.27Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=... [more]
YPEL4_HUMAN5.819e-2252.27Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884540 ID=CV884540; Name=CV884540; organism=Citrus sinensis; type=EST; length=678bp
ATAAAGTAGTCTAATTAGTTGCGAAGGTGACGTTGTTGTGTTGTTAATAA
TATGACAGGTCAAACTTAATTGTTTTTGCTTGCAAATTGCAATTCAAATG
GGAAGGATTTTTCTGGTGGAGCTGAAAGGCAGGTCTTATTACAAATGCAG
ATTCTGTAACAGCCATCTCGCTCTTGCTGATAGTGTCCTTTCCTGGTCCT
TTAATTGTCGTCGAGGAAGGGCATACCTCTTCAGTGATGTGGTGAATATA
ATGCTTGGACCTCAAGAGGAGAGGTTGATGCTCTCTGGCATGCATACTGT
GGAGGATATATTTTGCTGCTGCTGCGGACAAATTGTTGGCTGGAAATACG
TTGCTGCACACGACAAAAACCAAAAATACAAAGAAGGGAAGTTTGTTCTT
GAAAGATGGAGGATCGTTGAAGAGGTCACAGAGGAACTTAGTCTCGAAAC
CCATACTCATTCAAATGAGGCAGAAACTCCTTAGGAACGTGAAGTTTAAA
TTAAATCTAAACCATAGTGGCAAGACAATAGACTGTTAAGGAGCCATTTA
CACAATTGTGGGAACTGTAGACGGCTGCTTTGTGTTTCTATTATGTGGAC
TTTTGGCCAAAATCTTGTTTAGCACCGCATCGCCCTTGACCAACGTTTAG
GGGGGCCATTGGCTCACGAAGTTGGCCG
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