CV884531

Overview
NameCV884531
Unique NameCV884531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1939 contig Csv1_Contig1939:8..788. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3A_ARATH (Proteasome subunit beta type-3-A OS=Arabidopsis thaliana GN=PBC1 PE=1 SV=2)

HSP 1 Score: 381.719 bits (979), Expect = 2.424e-105
Identity = 187/200 (93.50%), Postives = 195/200 (97.50%), Query Frame = 2
Query:  125 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDR+FIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGPY CQPVIAGL D+DKPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAM+KPDME +ELFET+SQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRVFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPYLCQPVIAGLGDDDKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMYKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 204          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3B_ARATH (Proteasome subunit beta type-3-B OS=Arabidopsis thaliana GN=PBC2 PE=1 SV=1)

HSP 1 Score: 375.555 bits (963), Expect = 1.737e-103
Identity = 183/200 (91.50%), Postives = 193/200 (96.50%), Query Frame = 2
Query:  125 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHD LFIGLSGLATD QTLYQRLVFRHKLYQLREERDMKPETFASLVSA+LYEKRFGP+ CQPVIAGL D++KPFICTMDSIGAKELAKDFVV+GTA ESLYGACEAMFKPDME +ELFET+SQALLSSVDRDCLSGWGGHVY+VTP E+KERILKGRMD
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDHLFIGLSGLATDVQTLYQRLVFRHKLYQLREERDMKPETFASLVSAILYEKRFGPFLCQPVIAGLGDDNKPFICTMDSIGAKELAKDFVVSGTASESLYGACEAMFKPDMEAEELFETISQALLSSVDRDCLSGWGGHVYVVTPKEVKERILKGRMD 204          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_PICMA (Proteasome subunit beta type-3 OS=Picea mariana GN=PBC1 PE=2 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 8.071e-101
Identity = 175/200 (87.50%), Postives = 191/200 (95.50%), Query Frame = 2
Query:  125 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRI KIHD+L++GLSGLATD QTLYQR  FRHKLYQLREER+M+PETFASLVSALLYEKRFGPYFCQPVIAGL ++DKPFICTMDSIGAKELAKDFVVAGTA ESLYGACE+M+KPDMEP+ELFET+SQALLSS+DRDCLSGWGGHVY+V+P ++ ER LKGRMD
Sbjct:    5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRIFKIHDKLYVGLSGLATDVQTLYQRFAFRHKLYQLREERNMRPETFASLVSALLYEKRFGPYFCQPVIAGLGEDDKPFICTMDSIGAKELAKDFVVAGTAAESLYGACESMYKPDMEPEELFETISQALLSSIDRDCLSGWGGHVYVVSPNQVIERTLKGRMD 204          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_ORYSJ (Proteasome subunit beta type-3 OS=Oryza sativa subsp. japonica GN=PBC1 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.288e-98
Identity = 171/200 (85.50%), Postives = 192/200 (96.00%), Query Frame = 2
Query:  125 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            EYNGSA+VAMVGKNCFAIASDRRLGVQLQT+ATDFQR+ KIHD+L+IGLSGLATD+QTLYQRLVFRHKLYQLREERDMKP+TFASLVSALLYEKRFGPYFCQPVIAGL ++++PFICTMD IGAKELAKDFVV+GTA ESLYGACE+M+KP+MEP+ELFET+SQAL SSVDRDCLSGWGG V +VTPTE+KE ++KGRMD
Sbjct:    5 EYNGSAVVAMVGKNCFAIASDRRLGVQLQTVATDFQRVFKIHDKLYIGLSGLATDAQTLYQRLVFRHKLYQLREERDMKPQTFASLVSALLYEKRFGPYFCQPVIAGLGEDNEPFICTMDCIGAKELAKDFVVSGTASESLYGACESMYKPNMEPEELFETISQALQSSVDRDCLSGWGGFVLLVTPTEVKECVIKGRMD 204          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_SCHPO (Probable proteasome subunit beta type-3 OS=Schizosaccharomyces pombe GN=SPCC63.12c PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.076e-64
Identity = 112/200 (56.00%), Postives = 158/200 (79.00%), Query Frame = 2
Query:  125 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            EYNG + VAM GKNC AIASD RLGVQ  ++  +F ++  + D+ ++GL+GLATD QTLY+   ++  LY+ REER ++P+TFA+LVS+ LYEKRFGPYF  PV+AG+S+++ PFIC  DSIG  + A+DF+V+GTA E LYG CE++++P++EPD+LFET+SQALL++ DRDC+SGWG  VY++T  +  +R++KGR D
Sbjct:    5 EYNGGSCVAMAGKNCVAIASDLRLGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLYKFREERQIQPKTFANLVSSTLYEKRFGPYFSFPVVAGVSNDNTPFICGFDSIGCIDFAEDFIVSGTATEQLYGMCESVYEPNLEPDDLFETISQALLNAQDRDCISGWGCVVYVITADKCIKRLVKGRQD 204          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_DICDI (Proteasome subunit beta type-3 OS=Dictyostelium discoideum GN=psmB3 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 6.041e-64
Identity = 113/200 (56.50%), Postives = 149/200 (74.50%), Query Frame = 2
Query:  128 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDK-PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            YNG A + MVGKNC AIASD R G+Q QTI+ DF ++ +I+D+ F+G+SGL TD+QTLYQ+LVFRH LY+LREERDM P   ++L++ +LYEKRFGPYF +P+I GL   D  PFI  MD IGA     DF+V GT   ++YG CE ++K DM  D+LFET+SQ +L+S+DRD LSGWG  V+++TPT++  + L GR D
Sbjct:    6 YNGGACIVMVGKNCVAIASDLRFGIQQQTISNDFPKVYRINDKCFVGISGLVTDAQTLYQKLVFRHNLYKLREERDMSPRVVSNLLTNMLYEKRFGPYFTEPLICGLEGPDNTPFISGMDLIGASVATDDFLVVGTMTPAMYGVCETLYKKDMNEDDLFETISQCMLASLDRDALSGWGAIVHVITPTQVITKKLLGRQD 205          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_ONCMY (Proteasome subunit beta type-3 OS=Oncorhynchus mykiss GN=psmb3 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.329e-62
Identity = 115/200 (57.50%), Postives = 154/200 (77.00%), Query Frame = 2
Query:  128 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            YNG A++AM GK C AIA+DRR GVQ Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP+TF S+VS LLYE+RFGPY+ +PVIAGL  +  +PFIC++D IG   + +DFVV+GT  E +YG CE++++PDMEP++LFET+SQA+L++VDRD +SG G  V ++   +I  R LK RMD
Sbjct:    6 YNGGAVMAMKGKQCVAIAADRRFGVQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVSQRLKFRLNLYELKEGRQIKPKTFMSMVSNLLYERRFGPYYIEPVIAGLDPKTFEPFICSLDLIGCPMVTEDFVVSGTCSEQMYGMCESLWEPDMEPEDLFETISQAMLNAVDRDAVSGMGVVVQVIEKDKITTRTLKARMD 205          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_HUMAN (Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.260e-61
Identity = 115/200 (57.50%), Postives = 152/200 (76.00%), Query Frame = 2
Query:  128 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+PD LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_RAT (Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.665e-61
Identity = 114/200 (57.00%), Postives = 152/200 (76.00%), Query Frame = 2
Query:  128 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+I+   +I  R LK RMD
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDKITTRTLKARMD 205          
BLAST of CV884531 vs. ExPASy Swiss-Prot
Match: PSB3_MOUSE (Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.787e-61
Identity = 113/200 (56.50%), Postives = 152/200 (76.00%), Query Frame = 2
Query:  128 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDED-KPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMEPDELFETVSQALLSSVDRDCLSGWGGHVYIVTPTEIKERILKGRMD 724
            YNG A++AM GKNC AIA+DRR G+Q Q + TDFQ+I  + DRL+IGL+GLATD QT+ QRL FR  LY+L+E R +KP T  S+V+ LLYEKRFGPY+ +PVIAGL  +  KPFIC++D IG   +  DFVV+GT  E +YG CE++++P+M+P+ LFET+SQA+L++VDRD +SG G  V+++   +I  R LK RMD
Sbjct:    6 YNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCSEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDAVSGMGVIVHVIEKDKITTRTLKARMD 205          
The following BLAST results are available for this feature:
BLAST of CV884531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
PSB3A_ARATH2.424e-10593.50Proteasome subunit beta type-3-A OS=Arabidopsis th... [more]
PSB3B_ARATH1.737e-10391.50Proteasome subunit beta type-3-B OS=Arabidopsis th... [more]
PSB3_PICMA8.071e-10187.50Proteasome subunit beta type-3 OS=Picea mariana GN... [more]
PSB3_ORYSJ1.288e-9885.50Proteasome subunit beta type-3 OS=Oryza sativa sub... [more]
PSB3_SCHPO2.076e-6456.00Probable proteasome subunit beta type-3 OS=Schizos... [more]
PSB3_DICDI6.041e-6456.50Proteasome subunit beta type-3 OS=Dictyostelium di... [more]
PSB3_ONCMY4.329e-6257.50Proteasome subunit beta type-3 OS=Oncorhynchus myk... [more]
PSB3_HUMAN1.260e-6157.50Proteasome subunit beta type-3 OS=Homo sapiens GN=... [more]
PSB3_RAT3.665e-6157.00Proteasome subunit beta type-3 OS=Rattus norvegicu... [more]
PSB3_MOUSE4.787e-6156.50Proteasome subunit beta type-3 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008A10_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884531 ID=CV884531; Name=CV884531; organism=Citrus sinensis; type=EST; length=781bp
CTCCAAGCCATCAACATTTGTCATAAAAGAAGTTGGCGGTCTCAAAATTT
TGTTAAATCGTTTTGTTGCCAACTGAACTGAACTCGCATCAAGTCACTCT
ACAATTATAATTATGTCTATCACTGAGTACAATGGGAGCGCACTCGTTGC
GATGGTCGGAAAGAACTGCTTTGCCATTGCCAGCGATCGGCGCCTCGGCG
TTCAGCTTCAGACAATAGCCACTGATTTTCAGCGAATTTCCAAAATTCAC
GATCGCCTTTTTATCGGCCTCTCTGGACTCGCCACTGATTCCCAGACCTT
GTATCAAAGGCTGGTGTTTCGTCACAAATTGTATCAGCTGCGAGAGGAAA
GGGACATGAAGCCTGAAACTTTTGCTAGCTTAGTCTCTGCTTTGCTTTAT
GAGAAAAGGTTTGGCCCTTACTTCTGTCAACCTGTTATTGCTGGATTGAG
TGATGAAGACAAGCCCTTTATCTGCACAATGGACTCAATTGGAGCCAAGG
AGCTTGCAAAAGATTTTGTTGTTGCTGGAACTGCTGGAGAGTCTCTTTAT
GGTGCCTGTGAGGCAATGTTCAAGCCTGATATGGAACCCGATGAGTTGTT
TGAAACTGTATCTCAAGCTTTGTTATCATCTGTTGACCGTGACTGTTTGA
GTGGTTGGGGAGGACATGTCTACATTGTAACACCAACTGAAATAAAGGAA
AGAATCTTGAAGGGAAGGATGGATTGATCTATAACTGCAGTGCTGAAAGC
CACCCCTTCTGTTGCGTTCACTCTTCAGTAT
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