CV884502

Overview
NameCV884502
Unique NameCV884502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884502_ssr60 microsatellite CV884502_ssr60:60..77. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3346 contig Csv1_Contig3346:1..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884502 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  420 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 698
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++GE+ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   74 EEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
[Close]
BLAST of CV884502 vs. ExPASy Swiss-Prot
Match: HNRPD_MOUSE (Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus GN=Hnrnpd PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.668e-11
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  420 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 698
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++GE+ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   74 EEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 166
[Close]
BLAST of CV884502 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.963e-11
Identity = 29/93 (31.18%), Postives = 51/93 (54.84%), Query Frame = 3 
Query:  420 EAAENHRDVASRVRQVADEDPVHRKIFVHGLGWDTKAETLIDAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKTRSGARKALKEPQKKIGNRM 698
            E  E H + + R  + A       K+F+ GL WDT  + L D F ++G++ DC    D ++G+S+G+GF+LFK      K + + + K+  ++
Sbjct:   72 EEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKV 164
The following BLAST results are available for this feature:
BLAST of CV884502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HNRPD_HUMAN3.574e-1132.26Heterogeneous nuclear ribonucleoprotein D0 OS=Homo... [more]
HNRPD_MOUSE4.668e-1132.26Heterogeneous nuclear ribonucleoprotein D0 OS=Mus ... [more]
HNRPD_RAT7.963e-1131.18Heterogeneous nuclear ribonucleoprotein D0 OS=Ratt... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003H04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884502 ID=CV884502; Name=CV884502; organism=Citrus sinensis; type=EST; length=795bp
CGAAACCCTAACCATCGCCGCAGATCTATCTTTCGTCGAACAAAAGCTTT
TGTGGTTACTCTTCTTCTTCTTCTTCTTCGCAGTGTTCATCAATGGCTAA
AAAGCGAAAGCACGACTCCAAAACCAGCGAACCCACGGAACCTCCACAAA
AGCAATTACAACAAGAACCGCCGAAGCAAGAGGAGCCGATTGAAGAGGAG
GAGTACGAAGAAGAAGTAGAGGAAGAAGGAGAGGAAGAAGGAGAGGAAGA
AGAGGAAGAGGAAGAGGAAGAAGAGGAGGAGGAAGAAGAAGAGAAAGCCG
ACCAAAAGGAAGACGAAGAGGAGGAAGAAAAAGCTGATCAAAAGGATGAG
GACGACGACGAGCCGATACAGAGTCTTTTAGAGCCATTCAGCAAGGATCA
GCTTGTTAATCTGCTCTGCGAAGCAGCCGAAAATCATCGGGACGTAGCGA
GTCGAGTTCGGCAAGTTGCCGATGAGGATCCGGTGCATCGGAAGATATTC
GTCCACGGTCTCGGTTGGGACACCAAGGCCGAGACTTTAATTGATGCGTT
CAAGCAGTATGGCGAGATCGAGGATTGCAAAGCAGTTTGTGATAAGGTCT
CTGGAAAATCCAAGGGTTATGGTTTCATCCTATTCAAGACACGTAGCGGG
GCCCGCAAGGCTCTTAAGGAGCCCCAGAAGAAGATTGGTAACCGCATGAC
TGCCTGTCAGTTGGCGTCCATCGGGCCTGCCACGACTCCTGCTGTTGCTA
GTACTGCGACACACCAGCACCAGCACCAGCACCAGCACCAGCACC
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