CV884495

Overview
NameCV884495
Unique NameCV884495
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length980
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3344 contig Csv1_Contig3344:1..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FHY3_ARATH (Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidopsis thaliana GN=FHY3 PE=1 SV=1)

HSP 1 Score: 415.231 bits (1066), Expect = 1.521e-116
Identity = 202/279 (72.40%), Postives = 237/279 (84.95%), Query Frame = 1
Query:  109 MDIDLRLPSGEQTKEEEEHNGIDNMLDGEEKLSLHNGEIESGNIVVADEVRAEDGGGVNSPTEEMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            MDIDLRL SG+  K ++E  G+DN+L  EE + +  G+IE     V+ EV  +D  G+  PT E+V + E  NLEPL+GMEFESHGEAYSFYQEY+R+MGFNTAIQNSRRSKT+REFIDAKFACSRYGTKREYDKS+NRPRARQSKQD EN  GRR+CAKTDCKASMHVKRRPDGKWVIHSFV+EHNHELLPAQAVSEQTRK+YAAMA+QFAEYK V+ LK+D K+ F+K R L++E GD KILLDF ++MQ +NSNFFYA+DLG+DQR+KN+FWVDAK
Sbjct:    1 MDIDLRLHSGDLCKGDDEDRGLDNVLHNEEDMDI--GKIED----VSVEVNTDDSVGMGVPTGELVEYTEGMNLEPLNGMEFESHGEAYSFYQEYSRAMGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSFNRPRARQSKQDPENMAGRRTCAKTDCKASMHVKRRPDGKWVIHSFVREHNHELLPAQAVSEQTRKIYAAMAKQFAEYKTVISLKSDSKSSFEKGRTLSVETGDFKILLDFLSRMQSLNSNFFYAVDLGDDQRVKNVFWVDAK 273          

HSP 2 Score: 26.1794 bits (56), Expect = 1.521e-116
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3
Query:  942 QSRHDYNNFCDVV 980
            +SRH+Y +FCDVV
Sbjct:  273 KSRHNYGSFCDVV 285          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.055e-61
Identity = 124/237 (52.32%), Postives = 156/237 (65.82%), Query Frame = 1
Query:  304 VMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPA----------------------QAVSEQTRKMYAAMARQFAEYKNVVG-LKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            V F  D +LEP +G++F++H  AY FYQEYA+SMGF T+I+NSRRSK +++FIDAKFACSRYG   E + S +  R             R +  KTDCKASMHVKRRPDGKW+IH FVK+HNHELLPA                       AVSE+T+KMY  M+RQ   YKN+   L+ D  +  DK R LALE GD+++LL++F +++  N  FFYAIDL EDQRL+NLFW DAK
Sbjct:   41 VGFSGDLDLEPRNGIDFDTHEAAYIFYQEYAKSMGFTTSIKNSRRSKKTKDFIDAKFACSRYGVTPESESSGSSSR-------------RSTVKKTDCKASMHVKRRPDGKWIIHEFVKDHNHELLPALAYHFRIQRNVKLAEKNNIDILHAVSERTKKMYVEMSRQSGGYKNIGSLLQTDVSSQVDKGRYLALEEGDSQVLLEYFKRIKKENPKFFYAIDLNEDQRLRNLFWADAK 264          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS4_ARATH (Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis thaliana GN=FRS4 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 9.590e-47
Identity = 100/217 (46.08%), Postives = 131/217 (60.37%), Query Frame = 1
Query:  346 MEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQA---------------VSEQTRKMYAAM--ARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            MEFE+H +AY FY++YA+S+GF TA  +SRRS+ S+EFIDAKF+C RYG                SKQ  ++A   R+  K  CKASMHVKRRPDGKW ++SFVKEHNH+LLP QA                S   RK    +   +  + Y ++  +    +N  DK R L L+ GDA+ILL+F  +MQ  N  FF+A+D  ED  L+N+FWVDAK
Sbjct:    1 MEFETHEDAYLFYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYG----------------SKQQSDDAINPRASPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLPEQAHYFRSHRNTELVKSNDSRLRRKKNTPLTDCKHLSAYHDLDFIDGYMRNQHDKGRRLVLDTGDAEILLEFLMRMQEENPKFFFAVDFSEDHLLRNVFWVDAK 201          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS1_ARATH (Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=FRS1 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 8.402e-43
Identity = 105/213 (49.30%), Postives = 133/213 (62.44%), Query Frame = 1
Query:  325 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKRE------YDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            NLE   G EFES  EA+ FY+EYA S+GF T I+ SRRS+ + +FIDAKF C+RYG+K+E          +N P+AR  K+ + N    RS +KTDCKA +HVKRR DG+WV+ S VKEHNHE+   QA S     +     R+  E  N   +K        KSR   LE GD + LL+FFT MQ  N  FFY+IDL E+Q L+N+FWVDAK
Sbjct:   18 NLEIDEGREFESKEEAFEFYKEYANSVGFTTIIKASRRSRMTGKFIDAKFVCTRYGSKKEDIDTGLGTDGFNIPQAR--KRGRIN----RSSSKTDCKAFLHVKRRQDGRWVVRSLVKEHNHEIFTGQADS-----LRELSGRRKLEKLNGAIVKE------VKSRK--LEDGDVERLLNFFTDMQVENPFFFYSIDLSEEQSLRNIFWVDAK 211          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.393e-40
Identity = 93/204 (45.59%), Postives = 117/204 (57.35%), Query Frame = 1
Query:  340 SGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDPKN--PFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            +GM+FES   AY FY+EYARS+GF   I+ SRRSK S +FID K ACSR+GTKRE                +  A   RSC KT CKA +H+KR+ D KWVI++FVKEHNHE+ P                     Y +V G KN P       K   LALE  D K+LL+ F +MQ     FFYA+D   D+R++N+FW+DAK
Sbjct:   40 NGMDFESKEAAYYFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRE----------------KATAINPRSCPKTGCKAGLHMKRKEDEKWVIYNFVKEHNHEICPDDF------------------YVSVRG-KNKPAGALAIKKGLQLALEEEDLKLLLEHFMEMQDKQPGFFYAVDFDSDKRVRNVFWLDAK 208          

HSP 2 Score: 20.7866 bits (42), Expect = 3.393e-40
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  942 QSRHDYNNFCDVV 980
            +++HDY +F DVV
Sbjct:  208 KAKHDYCSFSDVV 220          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.312e-31
Identity = 96/316 (30.38%), Postives = 151/316 (47.78%), Query Frame = 1
Query:   94 NKIFIMDIDLRLPSGEQTKEEE---EHNGIDN--MLDGEEKLSLHNGEI-ESGNIVVADEVRAEDGGGVNSPTEEMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLP-----------------------AQAVSEQTRKMYAAMARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAKVGM 954
            N++   DI + + SG    ++    EH+ +D+  MLD    +   NG +  SGN     E  A D                  +LEP  G+EFES   A +FY  YAR +GF+T + +SRRS+     I  +F C++ G +   +K   R + R+ K+        R+  +  CKAS+ VK +  GKW++  FVK+HNHEL+P                        QA     R++ +A+ +++     V   + D +N    +R  ++E G+ ++LLD+  QM   N NFFY++   EDQ + N+FW D K  M
Sbjct:    4 NEVLDFDIGVGVSSGGDVDDDAIDIEHHALDDDDMLDSPI-MPCGNGLVGNSGNYFPNQEEEACDL----------------LDLEPYDGLEFESEEAAKAFYNSYARRIGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEK---RTKDREIKRP-------RTITRVGCKASLSVKMQDSGKWLVSGFVKDHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQKSIE-GEIQLLLDYLRQMNADNPNFFYSVQGSEDQSVGNVFWADPKAIM 291          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS8_ARATH (Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis thaliana GN=FRS8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.215e-18
Identity = 67/234 (28.63%), Postives = 103/234 (44.02%), Query Frame = 1
Query:  334 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMA----------------RQFAEYKNVV-------------GLKND-PKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            P  GMEFES+ +AYSFY  YAR +GF   +++S   + S+E   A   C+  G K   D                 A  RR   +T C+A + ++     +W +     +HNH   P +A + ++ K  ++ A                R    Y+ +              G  +D   + F  SR L L  G  + L DFF Q+Q  + NF Y +DL +D  L+N+FW+DA+
Sbjct:   66 PTPGMEFESYDDAYSFYNSYARELGFAIRVKSSWTKRNSKEKRGAVLCCNCQGFKLLKD-----------------AHSRRKETRTGCQAMIRLRLIHFDRWKVDQVKLDHNHSFDPQRAHNSKSHKKSSSSASPATKTNPEPPPHVQVRTIKLYRTLALDTPPALGTSLSSGETSDLSLDHFQSSRRLELRGG-FRALQDFFFQIQLSSPNFLYLMDLADDGSLRNVFWIDAR 281          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS6_ARATH (Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis thaliana GN=FRS6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.354e-18
Identity = 64/219 (29.22%), Postives = 100/219 (45.66%), Query Frame = 1
Query:  334 PLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAM-----ARQFAEYKNVV---GLKNDPKNPFDKSRN--------LALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDA 942
            P  GMEFES+ +AY++Y  YA  +GF   ++NS   + S+E   A   CS  G KR  D   NR R                  +T C A + +++    +W +     +HNH LL  +      RK          A+    Y+  V   G   +P +  +K           L L+ GD+  + ++F +MQ  N NFFY +D+ ++ +L+N+FW DA
Sbjct:   85 PAVGMEFESYDDAYNYYNCYASEVGFRVRVKNSWFKRRSKEKYGAVLCCSSQGFKRIND--VNRVRKE---------------TRTGCPAMIRMRQVDSKRWRVVEVTLDHNH-LLGCKLYKSVKRKRKCVSSPVSDAKTIKLYRACVVDNGSNVNPNSTLNKKFQNSTGSPDLLNLKRGDSAAIYNYFCRMQLTNPNFFYLMDVNDEGQLRNVFWADA 285          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS3_ARATH (Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.222e-17
Identity = 72/255 (28.24%), Postives = 107/255 (41.96%), Query Frame = 1
Query:  223 IESGNIVVADE--VRAEDGGGVNSPTEEMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAI-QNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQ-----------AVSEQTRKMYAAMARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLGEDQRLKNLFWVDAK 945
            +  GN  + DE  V   D  G N+    + +  E    EP  GMEF S  EA SFY EY+R +GF + +   +  S + REF+     CS          S  R + R S+                C A + ++ +   KWV+  FVKEH H L  +            A SE++             Y ++       +N    +        DA  LL++F +MQ  N  FFYA+ L ED ++ N+FW D++
Sbjct:   10 VSMGNHEIGDEGDVEPSDCSGQNNMDNSLGVQDEIGIAEPCVGMEFNSEKEAKSFYDEYSRQLGFTSKLLPRTDGSVSVREFV-----CS---------SSSKRSKRRLSES---------------CDAMVRIELQGHEKWVVTKFVKEHTHGLASSNMLHCLRPRRHFANSEKSSYQEGVNVPSGMMYVSMDANSRGARNASMATNTKRTIGRDAHNLLEYFKRMQAENPGFFYAVQLDEDNQMSNVFWADSR 235          
BLAST of CV884495 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.351e-16
Identity = 63/233 (27.04%), Postives = 99/233 (42.49%), Query Frame = 1
Query:  259 RAEDGGG---VNSPTEEMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQSKQDQENATGRRSCAKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVVGLKNDPKNPFDKSRNLALEAGDAKILLDFFTQMQHMNSNFFYAIDLG-EDQRLKNLFWVDAK 945
            R + GGG   V+    +    K  T  EP +G+EF S  EA  FYQ YA  +GF   I    RSK        +F CSR G        +  P                  ++  C A M +KR+  G W++    K+HNH+L P +  ++   K          +  +++ L +   N   K+R   +      +LLD+F   Q  +  FFYA++L   +    ++FW D++
Sbjct:  183 RFKGGGGEGEVSDDHHQTQQAKAVTGTEPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREG--------FQHP------------------SRMGCGAYMRIKRQDSGGWIVDRLNKDHNHDLEPGKK-NDAGMKKIPDDGTGGLDSVDLIELNDFGNNHIKKTRENRIGKEWYPLLLDYFQSRQTEDMGFFYAVELDVNNGSCMSIFWADSR 388          
The following BLAST results are available for this feature:
BLAST of CV884495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FHY3_ARATH1.521e-11672.40Protein FAR-RED ELONGATED HYPOCOTYL 3 OS=Arabidops... [more]
FAR1_ARATH1.055e-6152.32Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis... [more]
FRS4_ARATH9.590e-4746.08Protein FAR1-RELATED SEQUENCE 4 OS=Arabidopsis tha... [more]
FRS1_ARATH8.402e-4349.30Protein FAR1-RELATED SEQUENCE 1 OS=Arabidopsis tha... [more]
FRS2_ARATH3.393e-4045.59Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis tha... [more]
FRS5_ARATH3.312e-3130.38Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis tha... [more]
FRS8_ARATH3.215e-1828.63Protein FAR1-RELATED SEQUENCE 8 OS=Arabidopsis tha... [more]
FRS6_ARATH9.354e-1829.22Protein FAR1-RELATED SEQUENCE 6 OS=Arabidopsis tha... [more]
FRS3_ARATH1.222e-1728.24Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis tha... [more]
FRS12_ARATH1.351e-1627.04Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003G09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884495 ID=CV884495; Name=CV884495; organism=Citrus sinensis; type=EST; length=980bp
CTCATCCCTCGCGTGAGAATTTCTTGGTTTTGCTCTCCCGGACAGATCGA
AGCCGAAGCGCTAGAGGTGTCCTTGGAACATAGTTTGTAGAGTAACAAAA
TTTTCATCATGGACATAGATCTTAGGCTACCTTCGGGTGAACAAACAAAG
GAAGAGGAAGAACATAATGGGATTGACAACATGTTAGATGGTGAAGAGAA
ACTGTCACTGCATAATGGTGAGATAGAGAGTGGAAACATTGTAGTTGCTG
ATGAGGTACGTGCAGAAGATGGCGGTGGTGTGAATTCTCCCACAGAAGAA
ATGGTAATGTTCAAAGAGGATACAAATCTCGAGCCACTTTCTGGTATGGA
ATTTGAATCTCATGGTGAAGCATATTCTTTCTATCAAGAGTATGCTCGGT
CTATGGGATTCAACACTGCGATTCAAAACAGTCGCCGTTCAAAAACATCA
AGAGAATTCATTGATGCAAAATTTGCTTGTTCTAGATATGGAACTAAGCG
AGAGTATGATAAGTCCTATAACCGCCCTCGTGCCAGACAAAGCAAACAAG
ACCAAGAAAATGCAACTGGTAGACGGTCATGTGCAAAAACAGACTGCAAA
GCAAGTATGCATGTGAAGAGAAGGCCAGATGGAAAATGGGTTATTCATAG
TTTTGTGAAGGAACATAACCATGAACTTTTGCCAGCACAAGCTGTGAGTG
AACAAACCAGAAAGATGTATGCTGCAATGGCCAGACAGTTTGCTGAGTAT
AAAAATGTAGTTGGTCTGAAGAATGACCCCAAAAATCCATTTGATAAAAG
TCGGAATTTGGCACTGGAAGCAGGAGATGCCAAGATTTTGCTTGATTTTT
TTACACAGATGCAGCATATGAACTCCAACTTTTTCTATGCTATAGATCTG
GGTGAAGATCAACGGTTGAAGAATTTGTTCTGGGTTGATGCCAAAGTAGG
CATGATTATAATAATTTCTGTGACGTTGTG
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