CV884490

Overview
NameCV884490
Unique NameCV884490
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length438
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8642 contig Csv1_Contig8642:460..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884490 vs. ExPASy Swiss-Prot
Match: CHLP_TOBAC (Geranylgeranyl diphosphate reductase, chloroplastic OS=Nicotiana tabacum GN=CHLP PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.775e-43
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 3
Query:    3 KWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 260
            KWDKTYWPTYKVLD+LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYK+V PGNP+EDLKLAVNTIGSLVRANALRREMDKL++
Sbjct:  379 KWDKTYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVAPGNPIEDLKLAVNTIGSLVRANALRREMDKLSV 464          
BLAST of CV884490 vs. ExPASy Swiss-Prot
Match: CHLP_ARATH (Geranylgeranyl diphosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=CHLP PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 1.878e-39
Identity = 76/86 (88.37%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 KWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 260
            KWDKTY PTY+VLDVLQKVFYRSNPAREAFVEMC DEYVQKMTFDSYLYKRV PG+PLED+KLAVNTIGSLVRANALRRE++KL++
Sbjct:  382 KWDKTYLPTYRVLDVLQKVFYRSNPAREAFVEMCNDEYVQKMTFDSYLYKRVAPGSPLEDIKLAVNTIGSLVRANALRREIEKLSV 467          
BLAST of CV884490 vs. ExPASy Swiss-Prot
Match: CHLP_ORYSJ (Geranylgeranyl diphosphate reductase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLP PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.541e-38
Identity = 73/86 (84.88%), Postives = 83/86 (96.51%), Query Frame = 3
Query:    3 KWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLTI 260
            ++D+ YWPTYKVLDVLQKVFYRSN AREAFVEMCAD+YVQ+MTFDSYLYKRVVPGNPL+D+KLAVNTIGSLVRA ALRREM+K+T+
Sbjct:  378 EFDRLYWPTYKVLDVLQKVFYRSNAAREAFVEMCADDYVQRMTFDSYLYKRVVPGNPLDDIKLAVNTIGSLVRATALRREMEKVTL 463          
BLAST of CV884490 vs. ExPASy Swiss-Prot
Match: CHLP_SYNY3 (Geranylgeranyl diphosphate reductase OS=Synechocystis sp. (strain PCC 6803) GN=chlP PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.484e-24
Identity = 51/77 (66.23%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 KWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANAL 233
            +WDK Y  TY VLD+LQ+VFYR++  REAFVEMC+D  VQK+TFDSYLYK VVP NPL  +K+   TIGSL+R NAL
Sbjct:  329 QWDKRYGATYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTIGSLLRGNAL 405          
The following BLAST results are available for this feature:
BLAST of CV884490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CHLP_TOBAC4.775e-4393.02Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ARATH1.878e-3988.37Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_ORYSJ3.541e-3884.88Geranylgeranyl diphosphate reductase, chloroplasti... [more]
CHLP_SYNY36.484e-2466.23Geranylgeranyl diphosphate reductase OS=Synechocys... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003G07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884490 ID=CV884490; Name=CV884490; organism=Citrus sinensis; type=EST; length=438bp
AGAAGTGGGATAAGACTTACTGGCCAACTTATAAGGTACTGGATGTATTG
CAGAAGGTGTTTTACCGATCGAATCCAGCGAGGGAAGCATTTGTGGAGAT
GTGTGCCGATGAGTATGTGCAGAAGATGACATTTGATAGCTATTTGTATA
AAAGAGTGGTGCCCGGAAACCCATTGGAGGATTTGAAGTTGGCTGTGAAT
ACTATTGGGAGCTTGGTGAGAGCTAATGCACTTAGGAGGGAGATGGATAA
GCTGACCATCTGAATATAAGGAGAGGGAAAAAGAGTTTGATTCTTTTATT
TATGTTTCTTTTGAGCATGTTGTAAGAGAAAAAGATCAAACTTGATCCTA
TGGCTCCCCCCCACCCTTCAGTCTAATTATGTAAGAGAATAGTTTTATGC
ATTTATAGATTAATTTGCATTAATGCATCCTAAAAAAA
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