CV884489

Overview
NameCV884489
Unique NameCV884489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884489 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.487e-27
Identity = 49/142 (34.51%), Postives = 72/142 (50.70%), Query Frame = 3
Query:  222 ESSLSLRLHHVDSLSFNRTPEHLFNLRIQRDVLRVKSLTAFAESAVRVPPRNRSRGRANGGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDS 647
            +  L + L  VDS   N T   L    I+R   R++S+ A  +S                  SS + + +  G GEY   + +GTP      ++DTGSD++W QC PC +C+SQ  P+F+P  S SF+T+PC S  C+ L S
Sbjct:   39 QPGLRVDLEQVDS-GKNLTKYELIKRAIKRGERRMRSINAMLQS------------------SSGIETPVYAGDGEYLMNVAIGTPDSSFSAIMDTGSDLIWTQCEPCTQCFSQPTPIFNPQDSSSFSTLPCESQYCQDLPS 161          

HSP 2 Score: 52.373 bits (124), Expect = 2.487e-27
Identity = 24/47 (51.06%), Postives = 28/47 (59.57%), Query Frame = 2
Query:  653 CNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNE 793
            CN  N C Y   YGDGS T G  +TET TF  + V  +A GCG DN+
Sbjct:  164 CNN-NECQYTYGYGDGSTTQGYMATETFTFETSSVPNIAFGCGEDNQ 209          
BLAST of CV884489 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.210e-26
Identity = 45/109 (41.28%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  327 KSLTAFA--ESAVRVPPRNRSRGRANGGFSSSVISGLAQGSGEYFTRLGVGTPPRYVYMVLDTGSDVVWIQCAPCKKCYSQTDPVFDPAKSRSFATVPCRSPLCRKLDS 647
            K+LT F   E A+    R   R  A     S V + +  G GEY   L +GTP +    ++DTGSD++W QC PC +C++Q+ P+F+P  S SF+T+PC S LC+ L S
Sbjct:   52 KNLTKFQLLERAIERGSRRLQRLEAMLNGPSGVETSVYAGDGEYLMNLSIGTPAQPFSAIMDTGSDLIWTQCQPCTQCFNQSTPIFNPQGSSSFSTLPCSSQLCQALSS 160          

HSP 2 Score: 48.9062 bits (115), Expect = 1.210e-26
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 2
Query:  635 QARLSGCNRRNTCLYQVSYGDGSITVGDFSTETLTFRGTRVARVALGCGHDNE 793
            QA  S     N C Y   YGDGS T G   TETLTF    +  +  GCG +N+
Sbjct:  156 QALSSPTCSNNFCQYTYGYGDGSETQGSMGTETLTFGSVSIPNITFGCGENNQ 208          
The following BLAST results are available for this feature:
BLAST of CV884489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR2.487e-2734.51Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR1.210e-2641.28Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003G06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884489 ID=CV884489; Name=CV884489; organism=Citrus sinensis; type=EST; length=793bp
AAACACTCTGCTGTCCCTCAACTCTCCCTTCAATTTCAATGGAAGGGAAA
GCAAGAAACCATCTTCTCCTTCTCTTCTCCTTCTTCTTCACCGCCGCTGC
CTCTCTCCAGTATCAAACCTTCGTCCTTAACTCTCTCCCTACCCCATCCA
CTCTCTCTTGGCCTGAATCCGTATCCGTTTCCGAATCCGAATCTTCACTC
CCTCTACCAGCACCTGACGCAGAATCCTCGCTCTCCCTACGTTTACATCA
CGTAGACTCTCTGTCCTTCAACAGAACTCCAGAGCACCTCTTCAACCTCC
GCATCCAACGCGACGTCTTACGTGTCAAATCCTTAACCGCCTTCGCTGAA
TCTGCCGTTCGTGTTCCCCCGCGCAACCGCTCCCGCGGGCGTGCCAACGG
AGGCTTTAGTAGCTCCGTCATATCAGGGCTCGCACAAGGCAGCGGCGAGT
ACTTCACGCGCCTCGGAGTTGGCACACCCCCTAGGTATGTCTACATGGTC
TTAGACACCGGTAGCGACGTCGTTTGGATACAGTGCGCTCCGTGCAAGAA
ATGCTACTCTCAAACCGACCCTGTCTTCGACCCTGCCAAGTCCCGCTCGT
TTGCTACCGTACCCTGTCGGTCCCCTTTGTGCCGCAAGCTCGACTCTCTG
GCTGTAACCGCAGGAACACGTGTCTTTACCAAGTCTCCTACGGAGACGGT
TCTATCACCGTCGGTGATTTTTCCACTGAAACGCTGACGTTTCGTGGCAC
CAGAGTTGCGCGCGTGGCCCTCGGTTGTGGACACGACAATGAG
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