CV884484

Overview
NameCV884484
Unique NameCV884484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2841 contig Csv1_Contig2841:38..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 8.016e-80
Identity = 150/179 (83.80%), Postives = 160/179 (89.39%), Query Frame = -3
Query:  253 ALKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 789
            +LKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK              +KYRE KKID+HMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREERL
Sbjct:    3 SLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.786e-79
Identity = 148/179 (82.68%), Postives = 157/179 (87.71%), Query Frame = -3
Query:  253 ALKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 789
            +LK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTK               KYRE+KKIDRHMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KNKASRERK ARREERL
Sbjct:    3 SLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERL 181          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 294.278 bits (752), Expect = 5.196e-79
Identity = 150/179 (83.80%), Postives = 159/179 (88.83%), Query Frame = -3
Query:  253 ALKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 789
            +LKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK              +KYRE KKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERK ARREERL
Sbjct:    3 SLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERL 181          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 5.402e-60
Identity = 114/179 (63.69%), Postives = 138/179 (77.09%), Query Frame = -3
Query:  253 ALKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 789
            +LKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK              +KYR++KKIDRH+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K + +R+    RREER+
Sbjct:    3 SLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARK----RREERI 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.330e-58
Identity = 114/178 (64.04%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
The following BLAST results are available for this feature:
BLAST of CV884484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL191_ARATH8.016e-8083.8060S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH1.786e-7982.6860S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH5.196e-7983.8060S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME5.402e-6063.6960S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA1.330e-5864.0460S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT1.738e-5863.4860S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.738e-5863.4860S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.738e-5863.4860S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.738e-5863.4860S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.738e-5863.4860S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003G02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884484 ID=CV884484; Name=CV884484; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTGATTAGCAGTATTAAGAAACCTCCTTTCATCTGCAATATTTAAG
TAACAAGGTCCAAAAGAAACCAAAAAGAACATTCCTTTAACAAAACTGCT
CTGCCACAGTAACAGAGGACGCAAGCTACCTACGGTCAAAATCCTTCACT
GCTTTGTCAGGCGTTTTACTTCTTAGATTTTTTGGGTACCTCAGTTGACT
GAGATGCAGCAGCAGGTGGTGCGGTTGTTGGTGCTCCTCCAGGCCCCTGG
GCTAAACGTTCCTCCCTCCTAGCAATTTTCCTCTCCCTGCTTGCCTTGTT
CTTAGCCCGTTTAGCCTCAAACTGGTCAGACAAAGTTTTCTCCCTAGCCT
TCTCAGCCTTCGACTTGTGGATACTCTCCATCAAAACTCGCTTATTCTTA
AATACATTACCCTTAACCTTCATGTACATGTCATGATACATGTGTCTGTC
AATCTTCTTTGCTTCCCTGTACTTGCGGAGCAAGCGCCTGAGGACACGCA
TCCTTCTCATCCACAGGACTTTTGTAGGCAGCCTTGCTTCTCTTGTACCT
TTGCGCTTACCATATCCAGAGTGGCGACCCTTCCTCTTAGCTTCCTTCAT
GCGTCGAGCTCGTGAACGGGAGTGAATCTTGGTTGGTTTTCTGATGATAA
AGCCATCCTTGACCAGCTTCCTGATGTTCTGGCGTGAGTTGGCCATGGAT
ATTTCGTTGACTTCATTTGGATCAAGCCAGACCTTCCCTCTGCCACACTT
GAGCACGCTCGCTGAGAGCCGTTTTTGGAGCTTGAGTGCCT
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