CV884474

Overview
NameCV884474
Unique NameCV884474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig97 contig Csv1_Contig97:124..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_ARATH (Acyl carrier protein, mitochondrial OS=Arabidopsis thaliana GN=At2g44620 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.386e-38
Identity = 74/95 (77.89%), Postives = 87/95 (91.58%), Query Frame = -2
Query:  274 LGSLRFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 558
            LG++R  SSHDDHL++E V+DRVL VVK FPKVDPS+VTP+VHFQ DLGLDSLD VEIVMA+EEEFKLEIPDKEA +ID+C+LAIEY+YNHPM+S
Sbjct:   28 LGTIRSFSSHDDHLSREAVVDRVLDVVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAIEYVYNHPMSS 122          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_NEUCR (Acyl carrier protein, mitochondrial OS=Neurospora crassa GN=nuo-12 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  274 SLRFMSSHDDHLTKEEVIDRVLSVVKCFPKV-DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 552
            ++RF S+   HL K+EV  R+  V+  F KV DP  +T   HF  DLGLDSLD VE+VMA+EEEF +EIPDK+A +I + + A+EYI + P A+
Sbjct:   42 AVRFYSA-GGHLKKDEVFSRIAQVLSGFDKVNDPKNITETAHFANDLGLDSLDTVEVVMAIEEEFSIEIPDKDADQIHSVDKAVEYILSQPDAN 134          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACP_CYAME (Acyl carrier protein OS=Cyanidioschyzon merolae GN=acpP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.181e-15
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = -2
Query:  286 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 519
            +T+++++D+V S+V     V+ SQ++P+  F  DLG DSLDNVE+VMA+EEEF LEIPD  A +I     A++YI  H
Sbjct:    1 MTEQQILDKVQSIVSEQLGVERSQISPNASFTHDLGADSLDNVELVMAMEEEFDLEIPDSAAEQITTIQQAVDYILQH 78          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_YEAST (Acyl carrier protein, mitochondrial OS=Saccharomyces cerevisiae GN=ACP1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.069e-14
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = -2
Query:  274 RFMSSHDDHLTKEEVIDRVLSVVKCFPKVDPS----QVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 546
            RF S++   L+K++V  RV+ V+K F K  P+    Q++ D  F KDLGLDSLD VE+++A+EEEF +EIPDK A  + +    ++YI ++P A+
Sbjct:   34 RFYSAN---LSKDQVSQRVIDVIKAFDKNSPNIANKQISSDTQFHKDLGLDSLDTVELLVAIEEEFDIEIPDKVADELRSVGETVDYIASNPDAN 125          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_PONPY (Acyl carrier protein, mitochondrial OS=Pongo pygmaeus GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_PANTR (Acyl carrier protein, mitochondrial OS=Pan troglodytes GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_HUMAN (Acyl carrier protein, mitochondrial OS=Homo sapiens GN=NDUFAB1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_GORGO (Acyl carrier protein, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFAB1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_BOVIN (Acyl carrier protein, mitochondrial OS=Bos taurus GN=NDUFAB1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.396e-14
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -2
Query:  295 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 519
            LT E + DRVL V+K + K+DP +++ + HF KDLGLDSLD VEI+MA+E+EF  EIPD +A ++      ++YI
Sbjct:   74 LTLEGIKDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYI 148          
BLAST of CV884474 vs. ExPASy Swiss-Prot
Match: ACPM_SCHPO (Putative acyl carrier protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPAC4H3.09 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.823e-14
Identity = 45/92 (48.91%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  277 LRFMSSHDDHLTKEEVIDRVLSVVKCFPKV-DPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 549
            LRF S     + + +   R+L VV  F K+ DP +VTP   F  DLGLDSLD VE+VMA+EEEF ++IPDK+A  I +   AI YI  +P A
Sbjct:   25 LRFYS-----VARPDAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDADEITSVGDAISYITKNPEA 111          
The following BLAST results are available for this feature:
BLAST of CV884474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
ACPM_ARATH1.386e-3877.89Acyl carrier protein, mitochondrial OS=Arabidopsis... [more]
ACPM_NEUCR1.593e-1851.06Acyl carrier protein, mitochondrial OS=Neurospora ... [more]
ACP_CYAME8.181e-1548.72Acyl carrier protein OS=Cyanidioschyzon merolae GN... [more]
ACPM_YEAST1.069e-1444.21Acyl carrier protein, mitochondrial OS=Saccharomyc... [more]
ACPM_PONPY1.396e-1450.67Acyl carrier protein, mitochondrial OS=Pongo pygma... [more]
ACPM_PANTR1.396e-1450.67Acyl carrier protein, mitochondrial OS=Pan troglod... [more]
ACPM_HUMAN1.396e-1450.67Acyl carrier protein, mitochondrial OS=Homo sapien... [more]
ACPM_GORGO1.396e-1450.67Acyl carrier protein, mitochondrial OS=Gorilla gor... [more]
ACPM_BOVIN1.396e-1450.67Acyl carrier protein, mitochondrial OS=Bos taurus ... [more]
ACPM_SCHPO1.823e-1448.91Putative acyl carrier protein, mitochondrial OS=Sc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003F09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884474 ID=CV884474; Name=CV884474; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTGCATCTCAAGGAGGACAATGATAAAATGTCACCAG
ATCAAGCATCCAAATGCAGAATTGGATTACAGCAGAAAAACAACAGACGT
CATGAGACATGGGTTCTTCAAATTCTACTCATTATCAGACAGATTTGGAT
TATTTTCCATCTACCTTACAGAGATCATATGCAAAGCCTACAAAAAACAG
GGTAGAACAGATAATTTTTTTTCTTGATGCCCCCACAATAAATTCAAGAA
GAGAAACTTCCTTATTCAAATTAACTAGCCATCGGATGATTGTAGATGTA
CTCAATGGCAAGATTACACGCATCAATCCTAACAGCTTCCTTGTCAGGGA
TTTCAAGCTTGAACTCCTCTTCTAGCGCCATTACAATCTCCACATTGTCC
AAGCTATCCAAGCCCAAATCCTTCTGGAAATGCACATCAGGAGTCACCTG
GGAGGGATCGACTTTGGGGAAGCACTTGACAACAGAGAGCACTCTGTCAA
TGACCTCTTCTTTGGTCAAATGATCGTCGTGGGATGACATGAAACGCAGA
GAACCTAACCCT
back to top