EY679221

Overview
NameEY679221
Unique NameEY679221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.326e-42
Identity = 79/114 (69.30%), Postives = 92/114 (80.70%), Query Frame = 2
Query:    5 RVREMTLKSRPELGKDVWRVLEPMRASCGGSTSYRLGSEERCEPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQQH 346
            R  E   ++RP+LG +VWRVLEPMRAS GGS+S+ LG  E    PPYF CPIFQEVMQDPHVAADGFTYEAEA++ WLDS H+TSPMTN+ L+H +L+ N ALRSAIQEWLQ H
Sbjct:  720 RCCETVSENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEHRIAPPYFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEWLQHH 833          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB55_ARATH (Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.937e-28
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 2
Query:  131 EPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQQH 346
            +PP YF CPI QEVM++P VAADGFTYEAE+L+ WLD+GHETSPMTNL LAH NLVPN ALRSAIQEWLQ++
Sbjct:  496 QPPSYFICPISQEVMREPRVAADGFTYEAESLREWLDNGHETSPMTNLKLAHNNLVPNHALRSAIQEWLQRN 567          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB36_ARATH (U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.208e-24
Identity = 50/70 (71.43%), Postives = 56/70 (80.00%), Query Frame = 2
Query:  131 EPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQ 340
            EPP YF CPI  ++M+DPHVAADGFTYE EA+  W + GHETSPM N  L H +LVPNLALRSAIQEWLQ
Sbjct:  352 EPPQYFICPITHDIMEDPHVAADGFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQ 421          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB37_ARATH (U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.060e-24
Identity = 53/74 (71.62%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  116 SEERCEPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWL 337
            S+E  E P YF CPI  EVM+DP +AADGFTYEAEA+  WL  GHETSPMTN  L H  LVPNLALRSAIQEWL
Sbjct:  319 SDEHREAPQYFICPISLEVMKDPQLAADGFTYEAEAISTWLQGGHETSPMTNTKLHHTKLVPNLALRSAIQEWL 392          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB56_ARATH (U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.023e-23
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 2
Query:   68 EPMRASCGGSTSYRLGSEERCEPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQQH 346
            E +RA   G +S  L      EPP  F CPI +++MQ+PHVAADG+TYEA+  + WL+ G E SPMTNL L ++NL+PNL LRSAI++WLQQH
Sbjct:  272 ELLRALEKGESSIPLQWSVSIEPPQCFICPISKDIMQNPHVAADGYTYEADEFRRWLNHGGEKSPMTNLRLENRNLIPNLVLRSAIKDWLQQH 364          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.611e-22
Identity = 55/108 (50.93%), Postives = 74/108 (68.52%), Query Frame = 2
Query:   29 SRPELGKDVWRVLEPMRAS---CGGSTSYRLGSEERCEPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQQ 343
            +RP+L   V R ++ M+A       ++SY   +  R  PP ++ CPIFQEVM+DP +AADGFTYEAEA++ WL +GH+TSPMTNL +   NL+PN AL  AIQ+W  Q
Sbjct:  699 NRPDLAV-VLRFIDRMKAPEVPSSETSSYANQNVPR-RPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWQNQ 804          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB57_ARATH (U-box domain-containing protein 57 OS=Arabidopsis thaliana GN=PUB57 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.058e-20
Identity = 43/67 (64.18%), Postives = 56/67 (83.58%), Query Frame = 2
Query:  131 EPPPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQE 331
            +PPP F CPI Q+VM++PH+AADGFTYE EA++ W+++GH TSPMTNL L+H +  PN ALRSAI+E
Sbjct:  322 QPPPSFICPITQDVMKNPHMAADGFTYELEAIQKWINTGHRTSPMTNLKLSHFSFFPNRALRSAIEE 388          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB58_ARATH (Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana GN=PUB58 PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.404e-19
Identity = 48/87 (55.17%), Postives = 58/87 (66.67%), Query Frame = 2
Query:  122 ERCEPPPYFTCPIFQ-----------------EVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQE 331
            E+ +PP  F CPI Q                 EVM+DPH AADGFTYEAE+++ WL +GH+TSPMTNL L+H  LVPN ALRSAI+E
Sbjct:  349 EKRQPPSSFFCPITQASPNLYKKMITCITLNLEVMKDPHFAADGFTYEAESIRKWLSTGHQTSPMTNLRLSHLTLVPNRALRSAIEE 435          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB50_ARATH (Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.446e-19
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 2
Query:  137 PPYFTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEW 334
            P  F CPI QEVM++PHVAADGF+YE EA++ WL  GH+TSPMTNL L ++ L PN  LRS IQ+W
Sbjct:  690 PSVFMCPILQEVMKNPHVAADGFSYELEAIQEWLSMGHDTSPMTNLRLDYQMLTPNHTLRSLIQDW 755          
BLAST of EY679221 vs. ExPASy Swiss-Prot
Match: PUB54_ARATH (U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.689e-18
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 2
Query:   62 VLEPMRASCGG--STSYRLGSEERCEPPPY--FTCPIFQEVMQDPHVAADGFTYEAEALKGWLDSGHETSPMTNLPLAHKNLVPNLALRSAIQEWLQQH 346
            +LEP  +   G   T  +  S E  E P    F CPI  E+M+DPHVAADGFTYEAE  + WL SG  TSP TN PL + NLVPN  LR  I++WL+++
Sbjct:  205 ILEPEESPKKGRKETIEKSKSNESDEDPRLEDFKCPISMEIMRDPHVAADGFTYEAEEFRKWLRSGGRTSPKTNKPLENHNLVPNHTLRIIIKDWLEKN 303          
The following BLAST results are available for this feature:
BLAST of EY679221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PUB33_ARATH8.326e-4269.30U-box domain-containing protein 33 OS=Arabidopsis ... [more]
PUB55_ARATH8.937e-2877.78Putative U-box domain-containing protein 55 OS=Ara... [more]
PUB36_ARATH1.208e-2471.43U-box domain-containing protein 36 OS=Arabidopsis ... [more]
PUB37_ARATH2.060e-2471.62U-box domain-containing protein 37 OS=Arabidopsis ... [more]
PUB56_ARATH1.023e-2355.91U-box domain-containing protein 56 OS=Arabidopsis ... [more]
PUB32_ARATH5.611e-2250.93U-box domain-containing protein 32 OS=Arabidopsis ... [more]
PUB57_ARATH1.058e-2064.18U-box domain-containing protein 57 OS=Arabidopsis ... [more]
PUB58_ARATH3.404e-1955.17Putative U-box domain-containing protein 58 OS=Ara... [more]
PUB50_ARATH4.446e-1963.64Putative U-box domain-containing protein 50 OS=Ara... [more]
PUB54_ARATH1.689e-1850.51U-box domain-containing protein 54 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-056-F12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679221 ID=EY679221; Name=EY679221; organism=Citrus sinensis; type=EST; length=580bp
CCCACGCGTCCGTGAGATGACCCTAAAGAGTCGGCCAGAACTTGGAAAAG
ATGTGTGGAGGGTACTTGAACCAATGAGGGCTTCATGCGGAGGATCAACA
TCATACCGATTGGGTTCTGAAGAGCGCTGCGAGCCACCTCCATATTTTAC
CTGTCCCATTTTCCAGGAAGTAATGCAGGATCCACATGTAGCAGCGGATG
GTTTTACATATGAAGCAGAAGCATTGAAAGGATGGCTTGACAGCGGCCAC
GAGACTTCGCCCATGACAAACCTTCCACTTGCTCACAAAAATCTCGTCCC
CAACCTTGCTCTTCGTTCAGCAATTCAAGAGTGGCTGCAACAACATTGAT
ACGGGAGTTACTTGTAGTCTTGTCACATAGTATTGTTCATAGTCGTCAGG
AGAAGTTTAGACTAGTCGTGTCTCATCCATATGCACACCTCTTTTCTTTT
TGGCAGTATTTGTTCCGATTGTACATACAGACGGCTCACGGCTCTATGTT
TGTATAATGTATTTGTTCGATGTGTATTGCATTTACGTACTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAGGG
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