CV884449

Overview
NameCV884449
Unique NameCV884449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3340 contig Csv1_Contig3340:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.933e-22
Identity = 77/263 (29.28%), Postives = 127/263 (48.29%), Query Frame = 2
Query:  230 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL----------------------------AEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSS--SPQQDALQDDLTTTLVQQCRQSQFTV 910
            PV + +E AT  +L+  DW +N+++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ RGI FP  D ++L+PI TP RSV E +  AT+                            A  +   I   S    + +   D+ R + +++S +L+     Q+D+   +L   L + CR  Q  +
Sbjct:   12 PVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRRGIEFPMADLDALSPIHTPQRSVPEMDPAATIPRSQTQPRTTAGTYSSPPPASYSTLQAPALSVTGPITANSEQIARLRSELDIVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQHRI 272          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.625e-22
Identity = 76/260 (29.23%), Postives = 126/260 (48.46%), Query Frame = 2
Query:  230 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL----------------------------AEQIQRDIRGQSFTKEQTKEAFDVARNSIELLSTVLSS--SPQQDALQDDLTTTLVQQCRQSQ 901
            PV + +E AT  +L+  DW +N+++CD+IN  +    D IR +KKR+   ++ R   LAL +LET VKNC   F  + A R     VL +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +G+ FP  D ++L+PI TP RSV E +  AT+                            A  +   I   S    + +   DV R + +++S +L+     Q+D+   +L   L + CR  Q
Sbjct:   12 PVGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGVEFPMADLDALSPIHTPQRSVPEVDPAATMPRSQSQQRTSAGSYSSPPPAPYSAPQAPALSVTGPITANSEQIARLRSELDVVRGNTKVMSEMLTEMVPGQEDSSDLELLQELNRTCRAMQ 269          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.363e-20
Identity = 73/262 (27.86%), Postives = 127/262 (48.47%), Query Frame = 2
Query:  230 PVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAAER-----VLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEVDATL--AEQIQRD----------------------------IRGQSFTKEQTKEAFDVARNSIELLSTVLSS-SPQQDALQD-DLTTTLVQQCRQSQ 901
            PV + +E AT  +L+  DW +N+++CD+IN  +    D +R +KKR+   ++ R   LAL +LET VKNC   F      R     +L +++   ++P T+V  ++K L +I+AW ++      L      Y+ L+ +GI FP  D ++L+PI TP RSV E +    +  ++  +RD                            I   S    + +   D+ R +++++S +L+  +P Q+   D +L   L + CR  Q
Sbjct:   12 PVGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIV--QDKVLALIQAWADAFRSSPDLTGVVHIYEELKRKGIEFPMADLDALSPIHTPQRSVPEVDPATNMHTSQTQKRDSFSNLSNSKSTSTPYTAPGGPPPNVGGPISANSEQIGRLRSELDIVRGNVKVMSEMLTEMTPGQEGASDLELLQDLNRTCRTMQ 271          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.086e-20
Identity = 60/165 (36.36%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  227 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETE 703
            +PV + +E AT  +L+  DWA+N+++CD+IN  +    D  R +KKRIM  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E
Sbjct:   11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVH--DKVLNLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSE 173          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.031e-20
Identity = 63/185 (34.05%), Postives = 102/185 (55.14%), Query Frame = 2
Query:  227 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAFSEVAA-----ERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSVSETEV----DATLAEQIQRDIRGQ 751
            +PV + +E AT  +L+  DWA+N+++CD+IN  +    D +R +KKRI+  K+     LAL +LET VKNC   F  + A     E VL   +   ++P T+V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP R+V  +E     D+   +  Q++  GQ
Sbjct:   11 SPVGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVH--DKVLNLIQSWADAFRSSPDLTGVVTIYEDLRRKGLEFPMTDLDMLSPIHTPQRTVFNSETQSGQDSVGTDSSQQEDSGQ 193          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.889e-18
Identity = 58/161 (36.02%), Postives = 89/161 (55.28%), Query Frame = 2
Query:  227 NPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIM-LKSPRIQYLALVLLETVVKNCEKAF-----SEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFPGRDNESLAPIFTPPRSV 691
            +PV + +E AT  +L   DW++N+++CD+IN  +    D  R IKKRI+  K+     LAL +LET VKNC   F     S+   E VL   +   ++P  +V+  +K L +I++W ++      L      Y+ LR +G+ FP  D + L+PI TP RSV
Sbjct:   11 SPVGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVH--DKVLTLIQSWADAFRSSPDLTGVVAVYEDLRRKGLEFPMTDLDMLSPIHTPRRSV 169          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  218 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 640
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.704e-16
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  218 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 640
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+ +L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.612e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  218 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 640
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
BLAST of CV884449 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.023e-16
Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2
Query:  218 QGPNPVEKLVEDATSEALEEPDWAMNLDLCDMINTEKISSVDLIRGIKKRIMLKSPRIQYLALVLLETVVKNC-EKAFSEVAAERVLDEMVKLIDDPQTVVNNRNKALVMIEAWGESTSELRYLPVYEETYKSLRSRGIRFP 640
            +G    E+L++ ATS+ L E DW   L +CD+I      +   +  IKK++  K+P +   AL ++E+VVKNC +    EVA ++ ++E+  L+   Q  VN RNK L +I+AW  +        V ++TY+ ++  G  FP
Sbjct:    3 RGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR-QVEVNVRNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFP 143          
The following BLAST results are available for this feature:
BLAST of CV884449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
TM1L2_MOUSE1.933e-2229.28TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN5.625e-2229.23TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_XENLA2.363e-2027.86TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TOM1_MOUSE3.086e-2036.36Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]
TOM1_HUMAN4.031e-2034.05Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_CHICK2.889e-1836.02Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
HGS_RAT2.704e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE2.704e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN4.612e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN6.023e-1633.80Hepatocyte growth factor-regulated tyrosine kinase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003E06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884449 ID=CV884449; Name=CV884449; organism=Citrus sinensis; type=EST; length=910bp
AGAAAGTTCAATAACTTAACCGAGTCGTTGGGCGTCGTCTCAACTCAACA
ACTCTATTTTCAGTTTTAAAGGATTTTAAACCGTTGCAAAGATGAGTGAT
AATTTGATGGAGAAAGTTAGTGCCTTTGGTGAACGCCTCAAGATTGGAGG
GGCTGAAGTGGGTCGTAAAATGAGTGAAGGAATGAGCCAAATGAGCTTCA
AGATGAAGGAGCTCTTCCAAGGCCCAAACCCAGTTGAAAAACTTGTTGAG
GATGCCACCTCTGAGGCCCTTGAGGAGCCTGATTGGGCCATGAATCTCGA
TCTCTGTGACATGATCAATACCGAGAAAATCAGCAGTGTTGATTTGATCC
GTGGCATAAAGAAAAGGATCATGTTGAAGAGCCCTAGGATTCAGTATTTG
GCCTTGGTACTGCTTGAAACAGTTGTTAAAAACTGTGAGAAGGCCTTCTC
CGAGGTGGCAGCTGAGAGGGTTCTTGATGAAATGGTCAAGCTGATTGATG
ATCCTCAAACTGTTGTCAATAATAGGAACAAGGCTTTGGTGATGATTGAA
GCTTGGGGTGAGTCCACAAGCGAACTTCGATACTTGCCCGTATATGAAGA
AACATACAAGAGTTTAAGATCACGGGGCATCCGGTTTCCGGGACGTGACA
ATGAGAGCTTGGCGCCTATTTTTACACCTCCTCGTTCAGTTTCAGAAACA
GAAGTGGATGCTACTCTTGCTGAGCAGATTCAGCGTGATATTCGTGGGCA
AAGCTTTACCAAAGAACAAACAAAGGAAGCCTTTGATGTTGCAAGAAACA
GTATCGAGCTTCTTTCAACTGTTCTATCATCCTCACCCCAACAAGACGCT
TTACAGGATGACTTGACAACTACACTAGTGCAACAGTGTCGTCAGTCCCA
ATTCACTGTC
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