FC871865

Overview
NameFC871865
Unique NameFC871865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
AbsCFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC871865_ssr358 microsatellite FC871865_ssr358:358..372. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6574 contig Csv1_Contig6574:2..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.554e-24
Identity = 52/62 (83.87%), Postives = 56/62 (90.32%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L +AF  + DI +SKIINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQ
Sbjct:   22 LEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQ 83          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.741e-23
Identity = 50/62 (80.65%), Postives = 57/62 (91.94%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L  AF  Y ++L+SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   24 LETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.192e-23
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L  AF  Y D+++SKIINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   24 LETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.014e-22
Identity = 48/62 (77.42%), Postives = 57/62 (91.94%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L  AF  + ++++SKIINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQ
Sbjct:   24 LETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.877e-20
Identity = 47/62 (75.81%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            LH AF  Y ++LESKII DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQ
Sbjct:    3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ 64          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L  AF  Y D+++SKII DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQ
Sbjct:   22 LQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQ 83          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L   F  + D+++SKIINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQ
Sbjct:   22 LQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.907e-20
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L   F  + ++++SKIINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQ
Sbjct:   22 LERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQ 83          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.428e-19
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L  AF +Y +IL+SK+I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   24 LENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQ 85          
BLAST of FC871865 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.578e-18
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 3
Query:   90 LHEAFGAYSDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 275
            L +AF  +  +++SK+I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQ
Sbjct:   24 LEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQ 85          
The following BLAST results are available for this feature:
BLAST of FC871865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GRP1_DAUCA9.554e-2483.87Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP1_SINAL4.741e-2380.65Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH6.192e-2379.03Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP2_SINAL4.014e-2277.42Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SORBI2.877e-2075.81Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
GRP_HORVU4.907e-2072.58Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP8_ARATH4.907e-2072.58Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA4.907e-2070.97Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRPA_MAIZE1.428e-1972.58Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI1.578e-1867.74Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK1DF02FM2 AbsCFruit1 Citrus sinensis cDNA clone KN0AAK1DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC871865 ID=FC871865; Name=FC871865; organism=Citrus sinensis; type=EST; length=454bp
ATTTATGGTGTGTTTACTTTATGGATTGGGAATGAGAATGATCTGGAATG
TAAATGAGGAATGAGAACGAGATTACCATGGTTACTTGTCTCCATGAGGC
CTTCGGTGCTTACAGCGATATCCTTGAATCAAAAATAATTAACGATCGCG
AGACTGGAAGATCCAGAGGATTTGGATTCGTTACCTTCCGCGATGAGAAG
TCGATGAGGGACGCGATCGAAGGCATGAACGGCCAGAATCTCGACGGCCG
TAACATCACAGTCAACGAGGCCCAGTCCCGCGGAAGCGGTGGCGGTGGCG
GTGGTGGTTACGGAAGCCGCGGCGGTGGCGGATATGGAGGTGGTGGACGC
CGTGAAAGTGGTGGTGGTGGTGGATACGGTGGGAGCCGCGGATACGGAGG
TGGCGGTGGTGGAGGATATGGTGGCCGCCGTGAAGGCGGTTACAGCCGTG
ATGG
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