CV884419

Overview
NameCV884419
Unique NameCV884419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884419 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 178.333 bits (451), Expect = 4.408e-44
Identity = 94/172 (54.65%), Postives = 119/172 (69.19%), Query Frame = -2 
Query:  298 CTSQRLTNNKKPYDSCLDLPTLSSYLHYTYNATNSSLSIAFVSTPASPDG-WVAWAINPTAKGMAGSQALIALKSSGSL--VVKTYNIISYSNLTESKLSFQTWDLKAESGASGTTVIYGKLKVPEKAETLNQVWQVGAQVANGHPMKHEFKQANLQAKGPLNLVK--KPGS 798
            C SQ L N+  P+DSC DLP L+SYLHYTYN++NSSLS+AFV+TP+  +G WVAWAINPT   MAGSQA +A +S G    VVKTYNI SYS+L E KL+F  W+L+AES + G   I+  +KVP  A+++NQVWQ+G  V NG P  H F   NL +   L+  +   PGS
Sbjct:   29 CKSQNL-NSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSFTEDAAPGS 199
The following BLAST results are available for this feature:
BLAST of CV884419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH4.408e-4454.65Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C11_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884419 ID=CV884419; Name=CV884419; organism=Citrus sinensis; type=EST; length=817bp
TTTTTTTTTTTTTTTTGTAAACATAAATATATTAATTATTCGCCGAAAAA
ATAAAACACAGAGATCTCCAATGGACAAAATGCGGATAATAACTACAGCA
AAATACTAAAAATTAAAAAAAATAATAAAAAACAAAACTCAGAAAGTTTA
CAAAGCGGAAACTGTTACAAGAAACAGAACCAAACCCATAAACAATCCAA
CAACATTAGCTCTGATCATCGACTGTCCGCCCCTGTCGGGAGAAGGAACG
CCGGGGCTACCGGGGGTACCGGGAGTCGGCGCCGACGCCGGCGTCAAACT
ACCGGGCTTCTTGACCAAATTCAATGGCCCCTTGGCTTGAAGATTCGCCT
GCTTAAACTCATGTTTCATGGGATGTCCATTGGCCACCTGAGCACCCACC
TGCCACACTTGGTTCAACGTCTCCGCTTTCTCCGGAACCTTGAGCTTACC
GTAAATGACGGTGGTCCCGCTGGCACCGGATTCGGCCTTCAAGTCCCAGG
TTTGGAACGAGAGTTTTGATTCGGTGAGGTTGGAGTAGGAGATGATGTTG
TAAGTCTTGACGACGAGGGAGCCGCTGGATTTGAGGGCGATGAGGGCCTG
GGATCCGGCCATGCCCTTAGCCGTCGGGTTGATGGCCCACGCGACCCAGC
CGTCGGGCGACGCCGGAGTCGACACGAAGGCGATGGAGAGAGACGAGTTC
GTGGCGTTGTACGTGTAGTGGAGGTAAGAGCTCAAAGTGGGGAGATCGAG
GCAACTGTCGTAGGGCTTCTTGTTGTTGGTGAGTCTCTGCGAGGTGCAGG
TGAGGGAATGAGCCGGT
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