CV884407

Overview
NameCV884407
Unique NameCV884407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3338 contig Csv1_Contig3338:1..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CV884407 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.954e-20
Identity = 50/107 (46.73%), Postives = 66/107 (61.68%), Query Frame = -2 
Query:  471 EAKKAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQIGFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMP-ETDKLAEFAKVLAKLRAS 788
            E + AA+ Q +  L  LE AF +CSKGKPFFGG  +GF+D+  G YLGW    +K+   +L+D  +TP L  W ERF A  A K V+P + DKL EF + L +  AS
Sbjct:  127 EERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEFRQTLLRWSAS 233
[Close]
BLAST of CV884407 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.314e-13
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = -2 
Query:  489 AKKAAIEQLIEGLVLLEDAFVKCSKGKPFFGGSQI--GFLDIAFGCYLGWVRVTEKMNEVKLLDEVKTPGLFKWAERFCADAAVKDVMPETDKLAEFAKVL 785
            A+  A E     L LLE+AF   S G+ FF G     G LD+A GC+L  +R  E+++ + L+D   TP L  W++RF A  A K V+P+T+K+ +F + L
Sbjct:  125 ARAQAAEDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLALGCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQFTRFL 225
The following BLAST results are available for this feature:
BLAST of CV884407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GSTU6_ORYSJ1.954e-2046.73Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX2_MAIZE2.314e-1339.60Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003C03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884407 ID=CV884407; Name=CV884407; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTTAGATTGCAACTCAAATATTTAAGATTATTGAGT
TCGAAAATCGTTAATTCTTGCAAAATGCCATGCGGGAATTCCACCGTTAC
ATAATACGATAACTTTTATAACAACGAATATGGCACGTAGCCCAGATGTG
TACCGTATGTGGGAAAAAATTCTGCGGAGAAAAACAACACAGTAACCTTT
ATACCTTCACTTGGTATACATGAGTATAGATAATGAGCTCTTTGCAGCAG
ATGACTGAAAGGAATTTCAATTTTAGGAGACACGAGAGAGGCTGCTGCCT
AGCCCGATAACAGAACCCAAATGATACAGGCTTTACCGTTCCAAACTAAA
CCAAAAACAAAACTTAATCCTTATTCGAATTTATTTCTGGAAACAACTCT
TTTTTTTTTCTTTTTCTTTTTTTTTTGTGCCCCTCCAGGCACAGAATTAA
GCTTCTTAATTCCATTTGCCAGAAGCTCTGAGTTTGGCAAGAACCTTAGC
AAACTCTGCAAGCTTATCAGTCTCAGGCATAACATCTTTGACAGCGGCAT
CAGCACAGAATCTCTCAGCCCATTTGAACAGTCCAGGAGTTTTGACTTCA
TCAAGGAGCTTCACCTCATTCATTTTCTCTGTCACTCTCACCCATCCCAA
GTAGCAACCAAATGCAATGTCAAGAAACCCAATTTGGCTTCCACCAAAGA
AAGGCTTCCCTTTGCTACACTTAACAAAAGCATCCTCCAGCAAAACCAAG
CCTTCAATCAATTGCTCAATCGCAGCTTTCTTAGCTTCCGCTCCATCTCC
CCTACCAATG
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