CV884400

Overview
NameCV884400
Unique NameCV884400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884400_ssr462 microsatellite CV884400_ssr462:462..473. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3336 contig Csv1_Contig3336:1..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_ORYSJ (Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=Os07g0577700 PE=1 SV=1)

HSP 1 Score: 386.341 bits (991), Expect = 1.230e-106
Identity = 194/244 (79.51%), Postives = 206/244 (84.43%), Query Frame = 1
Query:  166 LSTSAAPAAHSRYYGSSAAAS-QPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAA 894
            L ++A+   H+R + ++AAA+  PAVFVDK+TRVICQGITGKNGTFHTEQAIEYGT MVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPF            LDLVVCITEGIPQHDMV+VKAALN+QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF+ DPQT               DAAA
Sbjct:   12 LGSAASRLLHARGFAAAAAAAPSPAVFVDKSTRVICQGITGKNGTFHTEQAIEYGTTMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAIMEAMEAELDLVVCITEGIPQHDMVKVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFVDDPQTEGIVLIGEIGGTAEEDAAA 255          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA1_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-1, mitochondrial OS=Arabidopsis thaliana GN=At5g08300 PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 1.663e-103
Identity = 199/273 (72.89%), Postives = 210/273 (76.92%), Query Frame = 1
Query:   82 MARQALAKLIGSIG--CRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAA 894
            M+RQ +A+LIGS+    RR ST  S   +    S      SR + S       AVFVDKNTRV+CQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFNSVAEAKA+TKANASVIYVP PF            LDL+VCITEGIPQHDMVRVK ALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAA
Sbjct:    1 MSRQ-VARLIGSLSSKARRCSTGGS-EVFPSCQSLTSLTQSRSFASDPHPPA-AVFVDKNTRVLCQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNSVAEAKADTKANASVIYVPAPFAAAAIMEGIEAELDLIVCITEGIPQHDMVRVKHALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAA 270          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA2_ARATH (Succinyl-CoA ligase [GDP-forming] subunit alpha-2, mitochondrial OS=Arabidopsis thaliana GN=At5g23250 PE=1 SV=2)

HSP 1 Score: 375.17 bits (962), Expect = 2.836e-103
Identity = 197/276 (71.38%), Postives = 211/276 (76.45%), Query Frame = 1
Query:   82 MARQALAKLIGSI-----GCRRPSTASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQTXXXXXXXXXXXXXXXDAAA 894
            M+RQ + +L+GS+     GC   S   S++             SR +G++      AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMV GVTPKKGGTEHLGLPVFN+VAEAKAETKANASVIYVP PF            LDL+VCITEGIPQHDMVRVKAALN QSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPG++GIVSRSGTLTYEAVFQTT VGLGQSTCVGIGGDPFNGTNFVDCLEKF VDPQT               DAAA
Sbjct:    1 MSRQ-VTRLLGSLRHSGGGCSGSSKVCSLTSL---------VQSRSFGTTPPPPA-AVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVAGVTPKKGGTEHLGLPVFNTVAEAKAETKANASVIYVPAPFAAAAIMEGLAAELDLIVCITEGIPQHDMVRVKAALNSQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGKIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCLEKFFVDPQTEGIVLIGEIGGTAEEDAAA 265          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_DICDI (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=scsA PE=1 SV=3)

HSP 1 Score: 317.775 bits (813), Expect = 5.374e-86
Identity = 149/214 (69.63%), Postives = 176/214 (82.24%), Query Frame = 1
Query:  196 SRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            +R +G    +++P+V ++K+T+VICQG TG  GTFH++QAIEYGT MVGGV+P KGG +HL LPVFN+V EAK  T ANA+VIYVPPP             ++LVVCITEGIPQ DMV+VK  LN+Q+KTRLIGPNCPGIIKPGECKIGIMPG+IHKPG++GIVSRSGTLTYEAV QTT VGLGQSTC+GIGGDPFNGTNF+DCL+ F  DPQT
Sbjct:    8 ARNFGKRFFSTKPSVLINKHTKVICQGFTGNQGTFHSKQAIEYGTNMVGGVSPGKGGQKHLDLPVFNTVKEAKEATGANATVIYVPPPHAAAAIKEAIDAEMELVVCITEGIPQQDMVKVKYLLNKQNKTRLIGPNCPGIIKPGECKIGIMPGHIHKPGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCIGIGGDPFNGTNFIDCLKMFTQDPQT 221          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_RAT (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Suclg1 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 9.166e-86
Identity = 151/208 (72.60%), Postives = 169/208 (81.25%), Query Frame = 1
Query:  214 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            S  AS+  +++DKNT+VICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPGII PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGTNF+DCL+ FL DP T
Sbjct:   42 SYTASRKNIYIDKNTKVICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHKLTRQGKTRLIGPNCPGIINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTNFIDCLDVFLKDPAT 249          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Mus musculus GN=Suclg1 PE=1 SV=4)

HSP 1 Score: 313.538 bits (802), Expect = 1.013e-84
Identity = 152/234 (64.96%), Postives = 178/234 (76.07%), Query Frame = 1
Query:  136 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            S++S ++  RL +       +     S  AS+  +++DKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG +HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ  TRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS C+GIGGDPFNGT+F+DCLE FL DP T
Sbjct:   16 SSSSGLAAARLLSRTFLLQQNGIRHGSYTASRKHIYIDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQKHLGLPVFNTVKEAKEKTGATASVIYVPPPFAAAAINEAIDAEIPLVVCITEGIPQQDMVRVKHRLTRQGTTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCIGIGGDPFNGTDFIDCLEVFLNDPAT 249          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_PIG (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Sus scrofa GN=SUCLG1 PE=1 SV=2)

HSP 1 Score: 310.071 bits (793), Expect = 1.120e-83
Identity = 151/208 (72.60%), Postives = 166/208 (79.81%), Query Frame = 1
Query:  214 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            S  AS+  ++VDKNT+VICQG TGK GTFH++QA+EYGT +VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T
Sbjct:   42 SYTASRKHLYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPAT 249          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 310.071 bits (793), Expect = 1.120e-83
Identity = 150/208 (72.12%), Postives = 167/208 (80.29%), Query Frame = 1
Query:  214 SAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            S  AS+  ++VDKNT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRLIGPNCPG+I PGECKIGIMPG+IHK GR+GIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F+DCLE FL D  T
Sbjct:   42 SYTASRQHLYVDKNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFIDCLEIFLNDSAT 249          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Bos taurus GN=SUCLG1 PE=2 SV=3)

HSP 1 Score: 310.071 bits (793), Expect = 1.120e-83
Identity = 154/234 (65.81%), Postives = 176/234 (75.21%), Query Frame = 1
Query:  136 STASSVSHYRLSTSAAPAAHSRYYGSSAAASQPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            S +S ++  RL + A     +     S   S+  ++VD+NT++ICQG TGK GTFH++QA+EYGTK+VGG TP KGG  HLGLPVFN+V EAK +T A ASVIYVPPPF            + LVVCITEGIPQ DMVRVK  L RQ KTRL+GPNCPG+I PGECKIGIMPG+IHK GRVGIVSRSGTLTYEAV QTT VGLGQS CVGIGGDPFNGT+F DCLE FL DP T
Sbjct:   16 SGSSGLAAARLLSRAFLLQQNGIRHCSYTTSRKHLYVDRNTKIICQGFTGKQGTFHSQQALEYGTKLVGGTTPGKGGKTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAVAAIDEAIEAEVSLVVCITEGIPQQDMVRVKHKLLRQGKTRLVGPNCPGVINPGECKIGIMPGHIHKKGRVGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPAT 249          
BLAST of CV884400 vs. ExPASy Swiss-Prot
Match: SUCA_DROME (Succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=Scsalpha PE=2 SV=3)

HSP 1 Score: 294.664 bits (753), Expect = 4.872e-79
Identity = 137/195 (70.26%), Postives = 163/195 (83.59%), Query Frame = 1
Query:  253 NTRVICQGITGKNGTFHTEQAIEYGTKMVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFXXXXXXXXXXXXLDLVVCITEGIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRVGIVSRSGTLTYEAVFQTTVVGLGQSTCVGIGGDPFNGTNFVDCLEKFLVDPQT 837
            ++RVICQG TGK GTFH++QA+EYGTK+VGG++PKKGGT+HLGLPVF SVAEAK  T  +A+VIYVPPP             + L+VCITEG+PQHDMV+VK AL  QSK+RL+GPNCPGII P +CKIGIMPG+IHK G++G+VSRSGTLTYEAV QTT VGLGQ+ CVGIGGDPFNGT+F+DCLE FL DP+T
Sbjct:   37 DSRVICQGFTGKQGTFHSQQALEYGTKLVGGISPKKGGTQHLGLPVFASVAEAKKATDPHATVIYVPPPGAAAAIIEALEAEIPLIVCITEGVPQHDMVKVKHALISQSKSRLVGPNCPGIIAPEQCKIGIMPGHIHKRGKIGVVSRSGTLTYEAVHQTTEVGLGQTLCVGIGGDPFNGTDFIDCLEVFLKDPET 231          
The following BLAST results are available for this feature:
BLAST of CV884400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SUCA_ORYSJ1.230e-10679.51Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCA1_ARATH1.663e-10372.89Succinyl-CoA ligase [GDP-forming] subunit alpha-1,... [more]
SUCA2_ARATH2.836e-10371.38Succinyl-CoA ligase [GDP-forming] subunit alpha-2,... [more]
SUCA_DICDI5.374e-8669.63Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_RAT9.166e-8672.60Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_MOUSE1.013e-8464.96Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_PIG1.120e-8372.60Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_HUMAN1.120e-8372.12Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_BOVIN1.120e-8365.81Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]
SUCA_DROME4.872e-7970.26Succinyl-CoA ligase [GDP-forming] subunit alpha, m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884400 ID=CV884400; Name=CV884400; organism=Citrus sinensis; type=EST; length=896bp
CTTCAATATATTTTGGGAAAAAAGAGAGAGACGAACTCGAGGGAGAAAAT
CAGCGAATCAGATTAAAGTGAAGTGAATCAAATGGCTCGCCAAGCCTTGG
CCAAGCTGATCGGCTCGATCGGATGTCGCAGACCCTCTACTGCTTCTTCC
GTTTCACATTACAGATTATCAACGTCGGCGGCGCCGGCGGCCCACTCTCG
ATATTATGGGTCGTCGGCGGCGGCGTCTCAGCCGGCAGTTTTCGTCGACA
AAAACACTCGAGTTATATGCCAAGGCATCACCGGAAAAAACGGCACGTTC
CATACCGAACAAGCCATCGAATACGGCACCAAAATGGTGGGTGGCGTGAC
GCCGAAGAAGGGTGGGACTGAGCACTTGGGACTTCCTGTATTCAACTCGG
TTGCTGAAGCTAAGGCTGAAACGAAGGCTAATGCTTCTGTCATTTATGTT
CCTCCGCCATTTGCTGCTGCTGCTATCATGGAGGCTATGGAGGCTGAGTT
GGATCTTGTCGTCTGTATCACCGAAGGAATCCCTCAACACGATATGGTGC
GAGTGAAAGCTGCTCTAAACAGGCAATCTAAAACTCGGCTGATTGGTCCC
AACTGCCCTGGTATCATCAAACCTGGAGAATGTAAGATTGGCATTATGCC
TGGGTATATTCACAAACCTGGGCGGGTTGGAATTGTTTCTCGATCTGGTA
CCTTGACCTACGAAGCAGTTTTTCAAACAACTGTAGTTGGCCTTGGACAA
TCAACCTGTGTAGGTATAGGTGGGGATCCTTTTAATGGGACAAACTTTGT
TGATTGCCTTGAAAAGTTCCTAGTTGATCCCCAGACAGAAGGTATTATTC
TAATAGGAGAGATCGGTGGGACTGCAGAAGAGGATGCCGCTGCCTT
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