CV884393

Overview
NameCV884393
Unique NameCV884393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_CUPLA (Glycerol-3-phosphate dehydrogenase [NAD+] OS=Cuphea lanceolata GN=GPDH PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.145e-62
Identity = 119/135 (88.15%), Postives = 124/135 (91.85%), Query Frame = -1
Query:  351 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGK 755
            GFVDGLEMGNNTKAAIMRIG REM+AFSKLLF  VKD+TFFESCGVADLITTCLGGRNRKVAEAFAKN GKRSFDDLEAEML+GQKLQGVSTA+EVYEVL  RGWLELFPLF+TVHEI  G  PPSAIVEYSE K
Sbjct:  233 GFVDGLEMGNNTKAAIMRIGLREMKAFSKLLFPSVKDTTFFESCGVADLITTCLGGRNRKVAEAFAKNGGKRSFDDLEAEMLRGQKLQGVSTAKEVYEVLGHRGWLELFPLFSTVHEISTGRLPPSAIVEYSEQK 367          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_ARATH (Glycerol-3-phosphate dehydrogenase [NAD+], chloroplastic OS=Arabidopsis thaliana GN=DHAPRD PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 9.470e-59
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = -1
Query:  351 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGK 755
            GFVDGLEMGNNTKAAIMRIG REM+A SKLLF  VKDSTFFESCGVAD+ITTCLGGRNR+VAEAFAK+ GKRSFD+LEAEMLQGQKLQGVSTAREVYEVL   GWLE+FPLF+TVH+IC G   P AIV+Y E K
Sbjct:  265 GFVDGLEMGNNTKAAIMRIGLREMKALSKLLFPSVKDSTFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVYEVLKHCGWLEMFPLFSTVHQICTGRLQPEAIVQYRENK 399          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_BOVIN (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Bos taurus GN=GPD1 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 4.006e-33
Identity = 73/137 (53.28%), Postives = 94/137 (68.61%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFS-FVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L  +G ++ FPLF  V+++C  + P    +   +  P
Sbjct:  212 GFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHKGMVDKFPLFTAVYKVCYENQPVGEFIHCLQNHP 346          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPD1L_DANRE (Glycerol-3-phosphate dehydrogenase 1-like protein OS=Danio rerio GN=gpd1l PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.834e-33
Identity = 74/138 (53.62%), Postives = 94/138 (68.12%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFS--FVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL+ G+NTKAA++R+G  EM AF+KL      V  +TF ESCGVADLITTC GGRNR+VAEAFAK    +S ++LE EML GQKLQG  T+ EVY +L  +G +E FPLF  V++IC    P   ++   +  P
Sbjct:  213 GFCDGLQCGDNTKAAVIRLGLMEMIAFAKLFSKDDSVSSATFLESCGVADLITTCYGGRNRRVAEAFAKT--GKSIEELEKEMLNGQKLQGPLTSAEVYHILKQKGLVEKFPLFTAVYQICFEDKPVRDMITCLQSHP 348          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_MOUSE (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Mus musculus GN=Gpd1 PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFS-FVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L  +G ++ FPLF  V+++C    P    +   +  P
Sbjct:  212 GFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGTVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFTAVYKVCYEGQPVGEFIRCLQNHP 346          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_HUMAN (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Homo sapiens GN=GPD1 PE=1 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 73/137 (53.28%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSF-VKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GF DGL  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE E+L GQKLQG  TARE+Y +L  +G ++ FPLF  V+++C    P    +   +  P
Sbjct:  212 GFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMAVYKVCYEGQPVGEFIHCLQNHP 346          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROVI (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila virilis GN=Gpdh PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 70/136 (51.47%), Postives = 92/136 (67.65%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ +DLE EML GQKLQG  TA EV  +L  +G  + FPLF  +H+IC     P  +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEDLEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICTNQLKPKDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROAE (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila americana GN=Gpdh PE=3 SV=4)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 70/136 (51.47%), Postives = 92/136 (67.65%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ +DLE EML GQKLQG  TA EV  +L  +G  + FPLF  +H+IC     P  +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEDLEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICTNQLKPKDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_DROKA (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Drosophila kanekoi GN=Gpdh1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.522e-32
Identity = 69/136 (50.74%), Postives = 93/136 (68.38%), Query Frame = -1
Query:  348 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFSFVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEICVGHFPPSAIVEYSEGKP 755
            GFVDGL++G+NTKAA++R+G  EM  F  + +   K STFFESCGVADLITTC GGRNR+V+EAF  +   ++ ++LE EML GQKLQG  TA EV  +L  +G  + FPLF  +H+IC+    P  +++     P
Sbjct:  214 GFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLSTFFESCGVADLITTCYGGRNRRVSEAFVTS--GKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPLFTAIHKICINQLKPKDLIDCIRNHP 347          
BLAST of CV884393 vs. ExPASy Swiss-Prot
Match: GPDA_RAT (Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic OS=Rattus norvegicus GN=Gpd1 PE=1 SV=4)

HSP 1 Score: 139.043 bits (349), Expect = 2.597e-32
Identity = 71/120 (59.17%), Postives = 89/120 (74.17%), Query Frame = -1
Query:  399 GFVDGLEMGNNTKAAIMRIGFREMRAFSKLLFS-FVKDSTFFESCGVADLITTCLGGRNRKVAEAFAKNEGKRSFDDLEAEMLQGQKLQGVSTAREVYEVLSPRGWLELFPLFATVHEIC 755
            GF DGL  G+NTKAA++R+G  EM AF+KL  S  V  +TF ESCGVADLITTC GGRNRKVAEAFA+    +S + LE EML GQKLQG  TARE++ +L  +G ++ FPLF  V+++C
Sbjct:  212 GFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGSVSSATFLESCGVADLITTCYGGRNRKVAEAFART--GKSIEQLEKEMLNGQKLQGPQTARELHSILQHKGLVDKFPLFTAVYKVC 329          
The following BLAST results are available for this feature:
BLAST of CV884393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GPDA_CUPLA3.145e-6288.15Glycerol-3-phosphate dehydrogenase [NAD+] OS=Cuphe... [more]
GPDA_ARATH9.470e-5982.22Glycerol-3-phosphate dehydrogenase [NAD+], chlorop... [more]
GPDA_BOVIN4.006e-3353.28Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPD1L_DANRE6.834e-3353.62Glycerol-3-phosphate dehydrogenase 1-like protein ... [more]
GPDA_MOUSE1.166e-3253.28Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_HUMAN1.166e-3253.28Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_DROVI1.166e-3251.47Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_DROAE1.166e-3251.47Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_DROKA1.522e-3250.74Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]
GPDA_RAT2.597e-3259.17Glycerol-3-phosphate dehydrogenase [NAD+], cytopla... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884393 ID=CV884393; Name=CV884393; organism=Citrus sinensis; type=EST; length=755bp
TTTTTTTTTTTTTTTTTCCAAAAAAAAACACTTTTGAATATCTAAAACAA
TGCAAAAACAGAAAATACTAGTAGTAAAAGCTTTTGAAGGCTAAAGGCAT
CTCTGAAGCTTGAAGGTTCCTGACACCCTGCATTTTCAGTTCCTTTGATC
GATCTCACTGTTACGGCAACTGATTTTGCATGAGTTAATTACCACCCAAA
AGTTTGTCTAGGCTTTGCTTCTGTTCATGCTGCACAACTTAAAAAAAGTT
TACTTTCAAAACTGTACCTCAAATACGTGAAATATATTACTTCTATCTGG
GGGAAGAGTCAGTAGTACTGAGTAAAGCCTTCCAGTAAAAACAATCTGGG
TTTGCCCTCACTGTACTCAACTATGGCTGACGGGGGGAAATGCCCAACGC
AAATCTCATGCACTGTTGCAAAAAGCGGAAACAGCTCTAGCCATCCACGG
GGGCTTAGCACTTCATAAACTTCTCTTGCAGTTGAAACTCCCTGTAATTT
CTGGCCCTGAAGCATCTCTGCTTCTAAATCATCAAAAGACCTTTTCCCTT
CGTTCTTAGCAAAAGCCTCGGCAACTTTTCTGTTTCTTCCTCCCAAGCAT
GTTGTGATGAGATCAGCTACCCCACAGCTCTCAAAGAAGGTGCTGTCCTT
AACAAATGAAAACAACAACTTGGAAAAGGCTCTCATCTCTCTGAAACCAA
TTCTCATTATTGCAGCCTTAGTGTTATTTCCCATTTCAAGGCCATCAACG
AAACC
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