CV884385

Overview
NameCV884385
Unique NameCV884385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length319
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:655..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.081e-33
Identity = 65/85 (76.47%), Postives = 78/85 (91.76%), Query Frame = -3
Query:    3 KMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGLKGRK 257
            + DSFLN++WGLSPK+MVVTEQDS+HNG TLMERLLE+LY+YAALFDCLE+ V RTS +R+KVEKMLFGEEIKNII+CEG + R+
Sbjct:  328 RTDSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRE 412          
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.758e-12
Identity = 33/81 (40.74%), Postives = 54/81 (66.67%), Query Frame = -3
Query:   18 AKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEG 260
            A +  FL  +   +P  +V+ EQ++ HN   L  R+  +L  Y+A+FD + ++++  S+ R+KVE+MLFG EI+NI+ACEG
Sbjct:  489 AAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEG 569          
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.114e-12
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = -3
Query:   15 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGL 254
            ++  ++S+  + PKI+ V EQ++NHNG   ++R  EAL+ Y+ LFD LE S    + + L + ++  G +I N++ACEG+
Sbjct:  382 IEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGM 461          
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.724e-12
Identity = 33/79 (41.77%), Postives = 52/79 (65.82%), Query Frame = -3
Query:   18 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEG 254
            ++  LN++  + P I+ V EQ++NHNG+  ++R  EAL+ Y++LFD LE S S  S +R+  E  L G +I N++A EG
Sbjct:  395 IEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYL-GRQILNVVAAEG 472          
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 30/79 (37.97%), Postives = 51/79 (64.56%), Query Frame = -3
Query:   18 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEG 254
            +D FL+++  + P IM V EQ++NHNG   ++R  E+L+ Y++LFD LE   S+  +    + ++  G +I N++ACEG
Sbjct:  359 IDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQDRV----MSELFLGRQILNLVACEG 433          
BLAST of CV884385 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.645e-11
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = -3
Query:   18 DSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEG 251
            D  L+ +  L+PK++ V EQD N N      R +EA   Y+A+F+ L+ ++ R S ER+ VE+     +I NI+ACEG
Sbjct:  444 DELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEG 521          
The following BLAST results are available for this feature:
BLAST of CV884385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SCL3_ARATH3.081e-3376.47Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
SCL28_ARATH1.758e-1240.74Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
GAI_GOSHI5.114e-1237.50DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
RGL2_ARATH8.724e-1241.77DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
RGL1_ARATH3.315e-1137.97DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
SCL1_ARATH9.645e-1139.74Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B03_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884385 ID=CV884385; Name=CV884385; organism=Citrus sinensis; type=EST; length=319bp
TCTTTCCTTCCTTTCAATCCTTCACAAGCTATAATGTTTTTAATTTCCTC
CCCAAACAGCATTTTCTCCACCTTCAATCTCTCCATTGATGTTCTTGAAA
CACTAGATTCTAAACAATCAAACAATGCTGCATACGAGTAAAGAGCCTCC
AATAACCTCTCCATGAGAGTCAAGCCATTGTGATTAGAATCCTGTTCTGT
CACCACCATAATTTTTGGTGACAAGCCCCACAGAGAATTAAGAAAGCTAT
CCATCTTTGCTGAAGCATTTGGAGACAGAGGCGATGATGAGACTGAATCA
GGACTCTGGCTATACCCCT
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