CV884384

Overview
NameCV884384
Unique NameCV884384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length329
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3800 contig Csv1_Contig3800:654..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.105e-37
Identity = 71/88 (80.68%), Postives = 83/88 (94.32%), Query Frame = 1
Query:   64 KMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            + DSFLN++WGLSPK+MVVTEQDS+HNG TLMERLLE+LY+YAALFDCLE+ V RTS +R+KVEKMLFGEEIKNII+CEGFER+ERHE
Sbjct:  328 RTDSFLNAIWGLSPKVMVVTEQDSDHNGSTLMERLLESLYTYAALFDCLETKVPRTSQDRIKVEKMLFGEEIKNIISCEGFERRERHE 415          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: SCL28_ARATH (Scarecrow-like protein 28 OS=Arabidopsis thaliana GN=SCL28 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.046e-15
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   61 AKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERH 324
            A +  FL  +   +P  +V+ EQ++ HN   L  R+  +L  Y+A+FD + ++++  S+ R+KVE+MLFG EI+NI+ACEG  R+ERH
Sbjct:  489 AAIRDFLGLIRSTNPIALVLAEQEAEHNSEQLETRVCNSLKYYSAMFDAIHTNLATDSLMRVKVEEMLFGREIRNIVACEGSHRQERH 576          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: GAI_GOSHI (DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.046e-15
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   67 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            ++  ++S+  + PKI+ V EQ++NHNG   ++R  EAL+ Y+ LFD LE S    + + L + ++  G +I N++ACEG +R ERHE
Sbjct:  382 IEKVVSSIKAMKPKIVTVVEQEANHNGPVFLDRFTEALHYYSTLFDSLEGSGVAPASQDLAMSELYLGRQICNVVACEGMDRVERHE 468          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: RGL2_ARATH (DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.608e-15
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   67 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            ++  LN++  + P I+ V EQ++NHNG+  ++R  EAL+ Y++LFD LE S S  S +R+  E  L G +I N++A EG +R ERHE
Sbjct:  395 IEKLLNTVKAIKPSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQDRVMSEVYL-GRQILNVVAAEGSDRVERHE 480          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: RGL1_ARATH (DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.272e-14
Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   67 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            +D FL+++  + P IM V EQ++NHNG   ++R  E+L+ Y++LFD LE   S+  +    + ++  G +I N++ACEG +R ERHE
Sbjct:  359 IDKFLSTIKSIRPDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGPPSQDRV----MSELFLGRQILNLVACEGEDRVERHE 441          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.616e-13
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   70 DSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            D  L+ +  L+PK++ V EQD N N      R +EA   Y+A+F+ L+ ++ R S ER+ VE+     +I NI+ACEG ER ER+E
Sbjct:  444 DELLHMVKSLNPKLVTVVEQDVNTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYE 529          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   70 DSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            D  L  +  LSPK++ + EQ+SN N      R +E +  YAA+F+ ++ ++ R   +R+ VE+     ++ NIIACEG +R ERHE
Sbjct:  342 DRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVERHE 427          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.052e-12
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   70 DSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            D  L  + GLSPK+  + EQ+S+ N    + R  E +  Y+A+F+ +++++ R + ER+ VE+    ++I NIIACEG +R ERHE
Sbjct:  423 DGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVERHE 508          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: GAI_SOLLC (DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.374e-12
Identity = 37/100 (37.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   67 MDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSM-------------ERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            ++  LNS+  ++PKI+ + EQ++NHN    ++R  EAL+ Y+ +FD LESS S +S              + L + ++  G +I N++ACEG +R ERHE
Sbjct:  410 IEKVLNSIKQINPKIVTLVEQEANHNAGVFIDRFNEALHYYSTMFDSLESSGSSSSASPTGILPQPPVNNQDLVMSEVYLGRQICNVVACEGSDRVERHE 509          
BLAST of CV884384 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.795e-12
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   70 DSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHE 327
            D  L  +  LSPK++ + EQ+ N N    + R LE L  Y A+F+ ++  + R   ER+ +E+     ++ NIIACEG ER ERHE
Sbjct:  265 DRLLRMVKSLSPKVVTLVEQECNTNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACEGAERIERHE 350          
The following BLAST results are available for this feature:
BLAST of CV884384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SCL3_ARATH2.105e-3780.68Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
SCL28_ARATH5.046e-1542.05Scarecrow-like protein 28 OS=Arabidopsis thaliana ... [more]
GAI_GOSHI5.046e-1540.23DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=... [more]
RGL2_ARATH8.608e-1543.68DELLA protein RGL2 OS=Arabidopsis thaliana GN=RGL2... [more]
RGL1_ARATH4.272e-1440.23DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1... [more]
SCL1_ARATH3.616e-1341.86Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
PAT1_ARATH1.052e-1238.37Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
CIGR1_ORYSJ1.052e-1239.53Chitin-inducible gibberellin-responsive protein 1 ... [more]
GAI_SOLLC1.374e-1237.00DELLA protein GAI OS=Solanum lycopersicum GN=GAI P... [more]
SCL21_ARATH1.795e-1239.53Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_003B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884384 ID=CV884384; Name=CV884384; organism=Citrus sinensis; type=EST; length=329bp
GACGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTCTCC
AAATGCTTCAGCAAAGATGGATAGCTTTCTTAATTCTCTGTGGGGCTTGT
CACCAAAAATTATGGTGGTGACAGAACAGGATTCTAATCACAATGGCTTG
ACTCTCATGGAGAGGTTATTGGAGGCTCTTTACTCGTATGCAGCATTGTT
TGATTGTTTAGAATCTAGTGTTTCAAGAACATCAATGGAGAGATTGAAGG
TGGAGAAAATGCTGTTTGGGGAGGAAATTAAAAACATTATAGCTTGTGAA
GGATTTGAAAGGAAGGAAAGACATGAGAA
back to top