CV884380

Overview
NameCV884380
Unique NameCV884380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884380_ssr187 microsatellite CV884380_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CV884380 vs. ExPASy Swiss-Prot
Match: YUID_BACSU (Uncharacterized membrane protein yuiD OS=Bacillus subtilis GN=yuiD PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.430e-18
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1 
Query:  292 KRWDSKKMLDSGGMPSSHSATVSALAVAIGLQEGSGSPSFAIAVVLACIVMYDASGVRLHAGRQAELLNQIVC----------EFPPDHPLSSVRPLRELLGHTPLQVVAGGILGCVVAFLM 627
            ++ D   +  +GGMPSSHSA V+AL+  + L+ G  S  FA++ + A I M+DA+GVR HAG QA ++N++V           +FP        + L+ELLGH P++V  GG+ G ++  ++
Sbjct:   32 RKLDWSLVTSTGGMPSSHSAAVTALSTGVALEHGLDSSLFAVSAIFAVITMFDATGVRRHAGEQATVINKLVIDFNRFVNEAKDFPKAAEKEKQKKLKELLGHQPIEVFFGGLTGILLTLVL 153
The following BLAST results are available for this feature:
BLAST of CV884380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YUID_BACSU3.430e-1837.70Uncharacterized membrane protein yuiD OS=Bacillus ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003A11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884380 ID=CV884380; Name=CV884380; organism=Citrus sinensis; type=EST; length=859bp
TGATTGTGGTTGTGGTTGTGCGAACTGTAAATTTTGAACTGTTGGGGATC
GTCTCATCCAATAGTTTTGGTGAAGAGAAAGCGGAAAATTAAAAAAAAAA
TTAAAATAATGGATGAGGTGATTACAGTAGGAGATGCGGCGTCGTTTAGG
AGTGGTCAAGCGACGTCCTTTTTGGATTCTCCTCCATCGTCGTCGTCGCT
GTTCTTCCCTAACAACCTCCCTCTGATCTCCGCATTTCTCGCCTTTGCTC
TTGCTCAATTCCTCAAGATCTTCACCACTTGGTATAAAGAAAAGAGATGG
GATTCTAAAAAGATGCTTGACTCTGGTGGAATGCCTTCGTCACATTCTGC
TACTGTGTCGGCTCTAGCAGTAGCTATTGGTCTGCAAGAAGGGTCAGGAA
GTCCATCTTTTGCCATTGCAGTGGTCTTGGCTTGCATTGTAATGTATGAT
GCCTCTGGGGTCAGACTACATGCTGGTCGGCAAGCTGAATTGCTGAATCA
AATAGTATGTGAGTTTCCTCCAGACCACCCATTGTCTAGTGTTAGACCTC
TACGTGAATTACTTGGTCATACCCCGTTACAGGTTGTGGCCGGTGGTATT
TTGGGATGCGTTGTAGCATTTCTGATGAGAAACTCGAACTAGATCATTAC
AAGATCAACATTGATTATTTGTTTCGTCTCCAATTGGCTGATAACCTGGT
AGATATAGGCAGCGGCTCGGCTGGGAGATACAAGTCACTTAAACAGATGT
ATAATGTATTCATTCAGTTATTCTGTAGTGATTTTGGGGTTTATTTGGAG
ACTGGATGACTATGTATTTTGTTAACCTAGAACTTCATTTTGTAAACTTA
AAACCTCTG
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